BAC Information

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BAC

Clone NameMSMg01-153L08
Chromosome7 (Build37)
Map Location 53,822,946 - 53,970,628
singlet/doubletdoublet
Overlap geneSergef, Tph1, Saal1, Saa3
Upstream geneBcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1
Downstream geneSaa4, LOC100040106, Saa1, Saa2, Hps5, Gtf2h1, EG668838, EG384622, Ldha, Ldhc, Tsg101, Uevld, C86187, LOC384623, ENSMUSG00000056509, Spty2d1, LOC100040174, Tmem86a, Ptpn5, LOC100041710, Mrgpra6, EG668725, Gm660, Mrgpra1, LOC668846, LOC100040217, LOC668727, Mrgpra2, LOC638950, Mrgprc4-ps, LOC677457, EG668729, Mrgpra3, Mrgprc1-ps, LOC100040314
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153L08.T7 (MSMg01no153_l08.b1)MSMg01-153L08.TJ (MSMg01no153_l08.g1)
ACCAG355225AG355226
length725819
length of high quality
(start - end)
508 (43 - 550)212 (131 - 342)
definitionCHROMAT_FILE: MSMg01no153_l08.b1 PHD_FILE: MSMg01no153_l08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:08 2005CHROMAT_FILE: MSMg01no153_l08.g1 PHD_FILE: MSMg01no153_l08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:08 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(53,822,946 - 53,823,440)(53,970,417 - 53,970,628)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATCCGCGGA
ATTCATTCTTATTCCTCTACTCTACCTCTACTCTTTTTAAAAATATAATT
TTTATTTTTATGTATACAGAGGTTTTGTATATATTTGTCTATTTTCATGT
GCATGCCAGGTACCCAGGAAGGCCAGAAGAGGGCACTGGACTCCCTGGAA
CTGGAGTTACAGATGGTTGTGAGCTGCCATGTGGATGCTGGGAATTTATC
CCAGGTGCTCTTAACCCTAGAGCCAGTTTTGCAGTTATATTTTATATTTT
GAGGTTCTATACAAATTTTTATTTGAAAATAGAAAGAAAATGGCTCTAGT
GTTGCCAAATACTTAAAAACTAAGAATAAATAGAATTATGAAATGTTGGA
ACCAGAAAGAATTTCGGCCCATGAATTTGTGAATGCTGAGAGGAGGCCAT
AAGAGAGGGAAGACTTGCCTAAGCCTTCACAGGAAACTAAATTCATTCAA
TACCAAATATTCTTCTGTGCCAGGCATTGGGTGGTAAGATGTATGATAAG
TCCTGGGAACTGGAGAGGTGTCTCAGTGATTTAAATCACTGGCTGACCTT
GCAGAATACCCAAGCTCGTATCCCAGTCCCCACAGAGCAGTCCATAATCA
CTTGTAGCTCAAGCTCTAGGCCATCATCCCAACACCCTCTTCTGAACTCT
GAGGGTACCATCCCACATGTGCCGT
TTATTTCTCTTATTTTCCCCACCCTTTATTCCTTTTCCCATTTTTTCCCT
CNCCCCTATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTACCTATAATCTTTGTT
TATATGTGTGTGGGTTTATGTATGAAATCCAGTGGGGTTTGTTACCAGTG
TGTAAGGATAGATAGCTCAGCACTGCAGAAGCATCCTCCACCCCACGAAA
TGGCACGCTCATCTTTGTTTTCCTGGCCCTACAGTAGGATGAAGCCTTCC
ATTGCCATCATTCTTTGCATCTTGATCCTGGGAGTTGACAGCCAAAGATG
GGTCCAGTTCATGAAAGAAGCTGGTCAAGGTAGGTTTCAAGGATGGGGGC
TGGAGGTTGCATTTCTGAGTTTTAATAATTAACTTGAGCAGGGACACATA
CTCTTTGGCTAATTTGCTTGCACAATCCAAATAGAGTGGGTGTGTGACCT
CTTCCTGAGAAGTTTGCAGCTTTTCCGATCATCGTTGATTTTTTTCTGTG
AGGATCCTAAATTCTTGGATCCTGTAATGTTTGTTCAGCCCCCTTCCCAC
GCTAACGTATCTGAATACTTGTTTGTCCTTGATCGTATACGTTTTTACCT
CCCCTTGCTTTACCCCGCATTTTTTTCTTGTTTTCCCTCCCCAACCAATA
ATTTATTATTCTCTCCTTCCCTTTCTTTGCCTTCTACGTTTACCATTGCT
CTTATTTTTTTTATCTCGGTCCTACCCATCTATCACCTTCCCCTACCTTT
ATTTGTTTTTCTTCTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_l08.b1 MSMg01no153_l08.b1 CHROMAT_FILE:
MSMg01no153_l08.b1 PHD_FILE: MSMg01no153_l08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:08 2005
         (508 letters)



>mm_chr7_53822737_53823644
          Length = 908

 Score =  936 bits (484), Expect = 0.0
 Identities = 493/496 (99%), Gaps = 1/496 (0%)
 Strand = Plus / Plus

                                                                       
Query: 9   attcattcttattcctctactctacctctactctttttaaaaatataatttttattttta 68
           |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 210 attcattcttac-cctctactctacctctactctttttaaaaatataatttttattttta 268

                                                                       
Query: 69  tgtatacagaggttttgtatatatttgtctattttcatgtgcatgccaggtacccaggaa 128
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tgtatacagaggttttgtatatatttgtctattttcatgtgcatgccaggtacccaggaa 328

                                                                       
Query: 129 ggccagaagagggcactggactccctggaactggagttacagatggttgtgagctgccat 188
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 ggccagaagagggcactggactccctggaactggagttacagatggttgtgagctgccat 388

                                                                       
Query: 189 gtggatgctgggaatttatcccaggtgctcttaaccctagagccagttttgcagttatat 248
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gtggatgctgggaatttatcccaggtgctcttaaccctagagccagttttgcagttatat 448

                                                                       
Query: 249 tttatattttgaggttctatacaaatttttatttgaaaatagaaagaaaatggctctagt 308
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttatattttgaggttctatacaaatttttatttgaaaatagaaagaaaatggctctagt 508

                                                                       
Query: 309 gttgccaaatacttaaaaactaagaataaatagaattatgaaatgttggaaccagaaaga 368
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gttgccaaatacttaaaaactaagaataaatagaattatgaaatgttggaaccagaaaga 568

                                                                       
Query: 369 atttcggcccatgaatttgtgaatgctgagaggaggccataagagagggaagacttgcct 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 atttcggcccatgaatttgtgaatgctgagaggaggccataagagagggaagacttgcct 628

                                                                       
Query: 429 aagccttcacaggaaactaaattcattcaataccaaatattcttctgtgccaggcattgg 488
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 aagccttcacaggaaactaaattcattcaataccaaatattcttctgtgccaggcattgg 688

                           
Query: 489 gtggtaagatgtatga 504
           |||| |||||||||||
Sbjct: 689 gtgggaagatgtatga 704


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no153_l08.g1 MSMg01no153_l08.g1 CHROMAT_FILE:
MSMg01no153_l08.g1 PHD_FILE: MSMg01no153_l08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:08 2005
         (212 letters)



>mm_chr7_53970217_53970828
          Length = 612

 Score =  371 bits (192), Expect = e-107
 Identities = 207/212 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttacctataatctttgtttatatgtgtgtgggtttatgtatgaaatccagtggggttt 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ccttacctataatctttgtttgtatgtgtgtgggtttatgtatgaaatccagtggggttt 353

                                                                       
Query: 61  gttaccagtgtgtaaggatagatagctcagcactgcagaagcatcctccaccccacgaaa 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gttaccagtgtgcaaggatagatagctcagcactgcagaagcatcctccaccccacgaaa 293

                                                                       
Query: 121 tggcacgctcatctttgttttcctggccctacagtaggatgaagccttccattgccatca 180
           ||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 292 tggcatgctcatctttgttttcctggccctatagcaggatgaagccttccattgccatca 233

                                           
Query: 181 ttctttgcatcttgatcctgggagttgacagc 212
           ||||||||||||||||||||||||||||||||
Sbjct: 232 ttctttgcatcttgatcctgggagttgacagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 212
Length of database: 612
Length adjustment: 9
Effective length of query: 203
Effective length of database: 603
Effective search space:   122409
Effective search space used:   122409
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)