BAC Information

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BAC

Clone NameMSMg01-153L24
Chromosome7 (Build37)
Map Location 121,815,307 - 121,815,574
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434228, Spon1, Rras2, LOC668451, Copb1, Psma1, 4933406I18Rik, Pde3b, Cyp2r1, Calca
Downstream geneLOC100043295, Calcb, Insc, EG627967, LOC668472, Sox6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153L24.T7 (MSMg01no153_l24.b1)MSMg01-153L24.TJ (MSMg01no153_l24.g1)
ACCAG355251AG355252
length799799
length of high quality
(start - end)
100 (71 - 170)275 (77 - 351)
definitionCHROMAT_FILE: MSMg01no153_l24.b1 PHD_FILE: MSMg01no153_l24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:11 2005CHROMAT_FILE: MSMg01no153_l24.g1 PHD_FILE: MSMg01no153_l24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCGAACCTCCGCGGAATTC
ATCTAAGATTTCCTCCAAAGTCTATGTGTGGGTTTATCTCCCAACCTGCG
TAAGTGCTGAGATGTGTGTCTCTGTGTGTGTGTGTATGTGTATGTGTGTG
TCTGTGTATGTTTGTATGACTGCGCCCCTACCACCCTCCAAACACATCAC
ACATCACCTTCATTTCCCAAATCCACCTCCCCACCCCAACATAACCTCCC
CCACTCCTCCCCCACCAACCCACTCTACAACCAAATACACCCTTTATCCT
CTTCCCAAAACCCCAACCATTTTTTTTCCCCACCAAGATCAACCACACCC
CCCATTTAATTTCTCATCCCCCCCCACATCCCTTACCTCCCCTTACAACA
CCCCCCTCACATCCCTACCCCCCCAACTTAAAACACCTCTCCTCCCCCTC
CATCCTCCCCCACTTATTCACACCCATAACCTACCACCCCACCATCTTAC
ACCCCCAAAACCCACAAACCACCCTCATCAACTCTCTCTACCCCACCCCC
CCCCCTTCATCTACCCCCACCCCCCCCAATATACCCACCCTTCATACAAC
AACCACACCCCCCACTATCCCCCCTCCCCCCCCATTCCCCCCCATATTAT
CCCCCCCCAATCTACCCCCACAACCCCCCTCATCCCCCTAAAAACACATC
CTCCCTCTCTCCCCTTCTACAACCCACTACTACCACATACCATTCTCCCC
CTTCTTCACTCACATCTCTTCCATCATATCTTCCCCCACTCCTCCCTCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACGGTGGTCAAAATCATGTGTGCC
TTGTTTGCTGAAATGTATACCCAGCACATTGGTTCATGTTTGGCCCATAC
TAAGTGCTTAGTAAGTGCACTGGTTGCAGCACATTATAAGTAAATATAAG
AAATATATAAGTGGCCGGGCAGTGGTGGCACATGCCTATAATCTCAGCAA
TTGGGAGGCAGAGGCTGTTGGATTTCTGAGTTAGAGGCCAGCCTGGTCTA
CACAGTGAGTTCCAGGACAGCCAGGGATACACAGAGAAATCCTGTCTCGA
ANAACCAAAAACAAAAAAAAAAACCAAACAAAAAAAGACACGCAAACCAA
CCCAACCCAAACAACCAAACCCACCAAAAACCCAAAAAAAACCCAACCCC
CCATCCAACCATTCTTTCCTTTTTATCGCACATTTTTTACCCCATATACC
CCAAATTAATTTTTTTTTTTATTTACCCCCCACCCNCCCCTTTTTACCCC
TTTTTTTTCCCTTCCCTTTAACCCCCCCCCTTCTNCCCCCTCTTTTCTTC
CCCCCAAATTTTATANANCATAAAAAAATAATAAGAATGGTTTCTATTCC
CCAATAAACAAGGATTTATCGGCCCCCCCAACACAAACAAAAAATCTGGA
CCCTTCTAACTCCGGCGAACCATACTGACCATACCANTTCCTTTTNTTTC
CTCTACCTCCCACATCTCCCCTCCCCTCCTTTCTTCTTTGTTTTCCTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_l24.g1 MSMg01no153_l24.g1 CHROMAT_FILE:
MSMg01no153_l24.g1 PHD_FILE: MSMg01no153_l24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:11 2005
         (275 letters)



>mm_chr7_121815100_121815774
          Length = 675

 Score =  449 bits (232), Expect = e-130
 Identities = 259/268 (96%)
 Strand = Plus / Plus

                                                                       
Query: 8   tcaaaatcatgtgtgccttgtttgctgaaatgtatacccagcacattggttcatgtttgg 67
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 208 tcaaaatcatgtgtgccttgtttgctgaaatgtatacccagcaccttggttcatgtttgg 267

                                                                       
Query: 68  cccatactaagtgcttagtaagtgcactggttgcagcacattataagtaaatataagaaa 127
           ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 268 cccatgctaagtgcttagtaagtgcactggttgcagcacattttaagtaaatataagaaa 327

                                                                       
Query: 128 tatataagtggccgggcagtggtggcacatgcctataatctcagcaattgggaggcagag 187
           |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct: 328 tatataagtggccgggcagtggtggcgcatgcctataacctcagcaattgggaggcagag 387

                                                                       
Query: 188 gctgttggatttctgagttagaggccagcctggtctacacagtgagttccaggacagcca 247
           ||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||
Sbjct: 388 gctgttggatttctgagttcgaggacagcctggtctacagagtgagttccaggacagcca 447

                                       
Query: 248 gggatacacagagaaatcctgtctcgaa 275
           ||| ||||||||||||||||||||||||
Sbjct: 448 gggctacacagagaaatcctgtctcgaa 475


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 675
Length adjustment: 9
Effective length of query: 266
Effective length of database: 666
Effective search space:   177156
Effective search space used:   177156
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)