BAC Information

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BAC

Clone NameMSMg01-153M05
Chromosome7 (Build37)
Map Location 139,381,505 - 139,545,959
singlet/doubletdoublet
Overlap gene4631426J05Rik, LOC100043682
Upstream gene5430419D17Rik, LOC546006, LOC100043173, Cuzd1, 1700007K09Rik, 1700063I17Rik, 2310057M21Rik, Pstk, Ikzf5, Acadsb, Hmx3, Hmx2, Bub3, LOC677073, LOC100043679, Gpr26, Cpxm2
Downstream geneLOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik, Zranb1, Ctbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-153M05.T7 (MSMg01no153_m05.b1)MSMg01-153M05.TJ (MSMg01no153_m05.g1)
ACCAG355261AG355262
length684701
length of high quality
(start - end)		456 (66 - 521)631 (71 - 701)
definitionCHROMAT_FILE: MSMg01no153_m05.b1 PHD_FILE: MSMg01no153_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:12 2005CHROMAT_FILE: MSMg01no153_m05.g1 PHD_FILE: MSMg01no153_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:12 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,381,505 - 139,381,960)(139,545,497 - 139,545,959)
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGCGGAA
TTCAGAAGGTATCCAAAGGTACCACAACTCATAAAAGAATTTACAATACC
TGACTGAGAATGTGACCCATGACAGAGAAACACCTTTTAAATAAAGAAAG
CCTTGAGCTGAAAGTATTTCCAGAGAGCAAGGGTAGGGGATTCCAAAGAA
AGCAGCTTCCCTCTGGCAGGGAAAAATGAATTGAGGGGCCAGCCTCAGGC
CAGTCCTCCAAAGAGGGGCTGCTTAAAAGAGATCCAGAAACCATGAGTGA
CTACCCATGCATGCTCAGCACAGGGCAAGAGAATGGCAGTGTACATGAGG
GGACACAATAAAGAAACTGCCAAAAAGACCACTCCGTTATTAGGGGTTTC
TGTCCAGAGCAGAGAGAAGGAGGAGCAGATTAGATGTGACCACAGCAACC
TACCAGAGAGGAGAGAGTGTGGTGGGGAGGGGACGGGGATAGTGGTGACA
GCAAGGTAGCAAAAGATGGAGAACAGAGGGTTGGGGGAGAATAGTCAGAG
TAGCTGGGCTATAACGAAGATGAGGAGCTGTGTAAGGGAAGGGCCAGAAG
GCTAGTGCGGACTTTCAAATGTTTAACCCTTGCTTCTGACTAGGGATCGA
TAGAAACTGTAGGTCTGCCTGGCCTTTGATATGT

ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAAACAAAACAAAAAAAAACAAAACAAAACA
AAAGCCAAAACCTAAGAGTAGAGAATAAAAATCAGTATAGGAAAAGCCCA
GGAGGTGCAGCAAAACAAAAGTCAGAAGGAAATGCATAGTCTTAGTTATA
AACTAAGGAGTGCACTCAGGTACCCGGGAAAAGAGAAGAAGGGAAATGAT
AAATGTCAGAGCAGAAATTGACAAAATAGGAAACAAAACAATCGATTGTT
CTATTTGAAAAAACATGTGAACAGGATTCTGGGTTTTGTTTGATTTAGTT
TGGAATGGGGTTTCACTATGTAGGGGAGTCTGGCCTCAAAATTCTTCTGC
CTTAGTTTCCCAAACACTTGGATTCCAGGCACAAGCCAATGTGTATGGCT
CAAAAGGTTTTATTGGAACAGACAATTTTTAGTAAATGTTGTCAGTAGTA
TGGTCATCTGCTTAGTTGCTATGTTCCCCTGAAACCTATGTTTTGTGTTC
ATTTCAAATGTCATTCTGTTCTTAGAGTCTGGTCCCTAGCCACAGTCCTT
AAATATTCTCAGGTTGAATGAGTGAAAGGACTTTTAGGCCCTTCTTGCTG
TGTGCCTTTGAGTCTGCTATTTAATCAAACCGAGTCCCACTTTCCTTCCT
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no153_m05.b1 MSMg01no153_m05.b1 CHROMAT_FILE:
MSMg01no153_m05.b1 PHD_FILE: MSMg01no153_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:12 2005
         (456 letters)



>mm_chr7_139381305_139382160
          Length = 856

 Score =  812 bits (420), Expect = 0.0
 Identities = 447/456 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaggtaccacaactcataaaagaatttacaatacctgactgagaatgtgacccatgacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 201 aaggtaccacaactcataaaagaatttacaatacctgactgagaatgcgacccatggcag 260

                                                                       
Query: 61  agaaacaccttttaaataaagaaagccttgagctgaaagtatttccagagagcaagggta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaaacaccttttaaataaagaaagccttgagctgaaagtatttccagagagcaagggta 320

                                                                       
Query: 121 ggggattccaaagaaagcagcttccctctggcagggaaaaatgaattgaggggccagcct 180
           |||||||||| || ||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 321 ggggattccagaggaagcagcttccctctggcagggaaggatgaattgaggggccagcct 380

                                                                       
Query: 181 caggccagtcctccaaagaggggctgcttaaaagagatccagaaaccatgagtgactacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caggccagtcctccaaagaggggctgcttaaaagagatccagaaaccatgagtgactacc 440

                                                                       
Query: 241 catgcatgctcagcacagggcaagagaatggcagtgtacatgaggggacacaataaagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 catgcatgctcagcacagggcaagagaatggcagtgtacatgaggggacacaataaagaa 500

                                                                       
Query: 301 actgccaaaaagaccactccgttattaggggtttctgtccagagcagagagaaggaggag 360
           |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 501 actgccaaaaagaccactccattattaggggtttctgtccagagcagagagaaggagggg 560

                                                                       
Query: 361 cagattagatgtgaccacagcaacctaccagagaggagagagtgtggtggggaggggacg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 561 cagattagatgtgaccacagcaacctaccagagaggagagagtgtggtggggaagggacg 620

                                               
Query: 421 gggatagtggtgacagcaaggtagcaaaagatggag 456
           ||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggatagtggtgacagcaaggtagcaaaagatggag 656


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 856
Length adjustment: 10
Effective length of query: 446
Effective length of database: 846
Effective search space:   377316
Effective search space used:   377316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no153_m05.g1 MSMg01no153_m05.g1 CHROMAT_FILE:
MSMg01no153_m05.g1 PHD_FILE: MSMg01no153_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:12 2005
         (631 letters)



>mm_chr7_139544929_139545959
          Length = 1031

 Score =  872 bits (451), Expect = 0.0
 Identities = 460/463 (99%)
 Strand = Plus / Minus

                                                                        
Query: 169  aagggaaatgataaatgtcagagcagaaattgacaaaataggaaacaaaacaatcgattg 228
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1031 aagggaaatgataaatgtcagagcagaaattgacaaaataggaaacaaaacaatcgattg 972

                                                                        
Query: 229  ttctatttgaaaaaacatgtgaacaggattctgggttttgtttgatttagtttggaatgg 288
            |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 971  ttctatgtgaaaaaatatgtgaacaggattctgggttttgtttgatttagtttggaatgg 912

                                                                        
Query: 289  ggtttcactatgtaggggagtctggcctcaaaattcttctgccttagtttcccaaacact 348
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 911  ggtttcactatgtaggggagtctggcctcaaaattcttctgccttagtttcccaaacact 852

                                                                        
Query: 349  tggattccaggcacaagccaatgtgtatggctcaaaaggttttattggaacagacaattt 408
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 851  tggattccaggcacaagccaatgtgtatggctcaaaaggttttattggaacagacaattt 792

                                                                        
Query: 409  ttagtaaatgttgtcagtagtatggtcatctgcttagttgctatgttcccctgaaaccta 468
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 791  ttagtaaatgttgtcagtagtatggtcatctgcttagttgctatgttcccctgaaaccta 732

                                                                        
Query: 469  tgttttgtgttcatttcaaatgtcattctgttcttagagtctggtccctagccacagtcc 528
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 731  tgttttgtgttcatttcaaatgttattctgttcttagagtctggtccctagccacagtcc 672

                                                                        
Query: 529  ttaaatattctcaggttgaatgagtgaaaggacttttaggcccttcttgctgtgtgcctt 588
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 671  ttaaatattctcaggttgaatgagtgaaaggacttttaggcccttcttgctgtgtgcctt 612

                                                       
Query: 589  tgagtctgctatttaatcaaaccgagtcccactttccttcctc 631
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611  tgagtctgctatttaatcaaaccgagtcccactttccttcctc 569


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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