BAC Information

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BAC

Clone NameMSMg01-154B12
Chromosome7 (Build37)
Map Location 12,339,347 - 12,339,791
singlet/doubletsinglet
Overlap genenone
Upstream geneBQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1
Downstream geneV1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154B12.T7 (MSMg01no154_b12.b1)MSMg01-154B12.TJ (MSMg01no154_b12.g1)
ACCAG355482AG355483
length699696
length of high quality
(start - end)
378 (42 - 419)445 (68 - 512)
definitionCHROMAT_FILE: MSMg01no154_b12.b1 PHD_FILE: MSMg01no154_b12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:38 2005CHROMAT_FILE: MSMg01no154_b12.g1 PHD_FILE: MSMg01no154_b12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:18:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAGAGGATCCGCGGA
ATTCCTTCTTTCTGTCCTCTACCATCATCATGAGATATGCTTTTAAATCC
AGGTCTACCTTTTCAGGTGTGTTAGGGTGTCCTGGATTGGGCGAGGTGGG
CGTTCTGGGTTCTGATGATGGTGAGTGGTCCTGGCTTCTGTTAGTAGGAT
TCTTACGTTTACCTTTCGCCATCTGGCAATCTCTGGAGTTAGTTGTTATA
GTTGTCTTTGTTAAAAGATTGTTCCTCTGTTGATTTTGTTACCCTCTATC
AGCAGGCGTGGGAGACAAGCTCTCTTCTCTGAGTTTCAGTGGTCAGAGCA
GTCTCTGTAGGCAAGCTCTCCTCTCTCAGGGAAGGTGTACAGTTATCTGG
TGTTTGGACCTCCTCCTGGCTGAAGGTGAAGGCCCAAAACAGGATCTTTC
CCAGAAGCTGTTTTTCTTTGGCCAGGAATGTGGCCAGTTGTCTGGAGTCT
ATTATGTCGCCGCCTCAGAATCTCTGTGGCTCTTGCCGGGAATGCGGCTG
GCTGTCTTGTAGCTGACGATGGCGCCGCTGCACAATCTCTGTGACTCTCT
CGCCCGTCCCATAAACGTTTGGTTCTCTCGCTTTCCCACGGTCACCCGTG
CAGTCTGCCCTCCGCGGTATCCCGGAGCCTACAAAGCTCTTGTCGTTTN
TCAATACAGTGCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTACACAAAAAATTCTTTTCCAATCTGTCTCCTTACTGAATAT
TTCACAATTTTATTTTCCATTACAGTTGAGCAAAATTTCACTGTAAATTT
CCATTGTCTGCTGATGAACATTATGTGTATCATGTTGTCCAACAGGATGG
ACATCATGTCTTCACTACAGCAGCTTACCTGGATGCACATGCCTGGTGTG
GTAGATTATAGAGTCCTTTAGATATATACCCCAAAATTATATAGCGTGTT
ATATGGTAATTCTATTTTTAATTACTTGAGGAATGTTTATATTCACTTCT
GTAATGAATGCATTACTTTGCCCTTCCACCAGTATAGAATTATGATTATT
TATCACAACATCTTCATCACTTGTTATTGTCTATTCTCTTGATGCTAATC
ATTCTAAGGTCTGAAAAGTAGTCTCAAAATATTTGGAATTTTCATTTCAC
GGGAATGCTAAGTAAGGTGAGTTTATGTAAAAAAAAAAAAAAGACATTTC
CTGCCCTTCTATGTTTCATATTTAAAGAATTACTGTCAGTTTCATTACTC
TACTGACTGAAATGTTAGTGAAGATATAGTTTAATCTTTATTTTCCTTTA
TAGCTGGTTGGTACTAAGCTCCTGATTCAAGTTCAAAAGTCCATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_b12.g1 MSMg01no154_b12.g1 CHROMAT_FILE:
MSMg01no154_b12.g1 PHD_FILE: MSMg01no154_b12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:18:38 2005
         (445 letters)



>mm_chr7_12339147_12339991
          Length = 845

 Score =  845 bits (437), Expect = 0.0
 Identities = 443/445 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattcttttccaatctgtctccttactgaatatttcacaattttattttccattacagtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aattcttttccaatctgtctccttactgaatatttcacaattttattttccattacagtt 260

                                                                       
Query: 61  gagcaaaatttcactgtaaatttccattgtctgctgatgaacattatgtgtatcatgttg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gagcaaaatttcactgtaaatttccattgtctgctgatgaacattatgtgtatcatgttg 320

                                                                       
Query: 121 tccaacaggatggacatcatgtcttcactacagcagcttacctggatgcacatgcctggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaacaggatggacatcatgtcttcactacagcagcttacctggatgcacatgcctggt 380

                                                                       
Query: 181 gtggtagattatagagtcctttagatatataccccaaaattatatagcgtgttatatggt 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gtggtagattatagagtcctttagatatataccccaaaattatatagcatgttatatggt 440

                                                                       
Query: 241 aattctatttttaattacttgaggaatgtttatattcacttctgtaatgaatgcattact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattctatttttaattacttgaggaatgtttatattcacttctgtaatgaatgcattact 500

                                                                       
Query: 301 ttgcccttccaccagtatagaattatgattatttatcacaacatcttcatcacttgttat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttgcccttccaccagtatagaattatgattatttatcacaacatcttcatcacttgttat 560

                                                                       
Query: 361 tgtctattctcttgatgctaatcattctaaggtctgaaaagtagtctcaaaatatttgga 420
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 561 tgtctattctcttgatgctaatcattctaaggtctgaaaaatagtctcaaaatatttgga 620

                                    
Query: 421 attttcatttcacgggaatgctaag 445
           |||||||||||||||||||||||||
Sbjct: 621 attttcatttcacgggaatgctaag 645


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space:   363225
Effective search space used:   363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)