Query= MSMg01no154_l14.b1 MSMg01no154_l14.b1 CHROMAT_FILE:
MSMg01no154_l14.b1 PHD_FILE: MSMg01no154_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:26 2005
(668 letters)
>mm_chr7_117605172_117606238
Length = 1067
Score = 1093 bits (565), Expect = 0.0
Identities = 580/585 (99%), Gaps = 1/585 (0%)
Strand = Plus / Minus
Query: 84 taagattccattcttttcataggtcaagaggctgatttcaagggcttgagacatagctca 143
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 1067 taagattccattcttttcataggtcaagaggctgatttcaagggcttgagacatggctca 1008
Query: 144 gtggctaagagaacatctagcatctacaccacatagcttacaaccgtctgtaagcccaac 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 gtggctaagagaacatctagcatctacaccacatagcttacaaccgtctgtaagcccaac 948
Query: 204 tccagggacacctgaccttagtagccacttgtatacatgttcatggactcaccccacaca 263
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 947 tccagggacacctgaccttagtagccacttgtatgcatgttcatggactcaccccacaca 888
Query: 264 catatatataattaaaataatgaaaagaaatctttaaaaaaaaaaaaggagcccattttc 323
|||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 887 catatacataattaaaataatgaaaagaaatcttt-aaaaaaaaaaaggagcccattttc 829
Query: 324 agactgagttcccctttaggtggcataattagcagacatacttgatccaccttcaaacct 383
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 828 agactgagttcccctttaggtggcataattagcagacatacttgacccaccttcaaacct 769
Query: 384 acttttgacctttgtggacatatctttctttagaaagaatttttcaatatgattctgctg 443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 acttttgacctttgtggacatatctttctttagaaagaatttttcaatatgattctgctg 709
Query: 444 cttttttatttttgtatatagttatacctcaattatactaagtaaaaaaaaatgaccaaa 503
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708 cttttttatttttgtatatagttatacctcaattatactaagtaaaaaaaaatgaccaaa 649
Query: 504 attagaagacaaaattgagtaaactctttttgtaacattgtaactttttaaaaatagatc 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 attagaagacaaaattgagtaaactctttttgtaacattgtaactttttaaaaatagatc 589
Query: 564 cctttttgtctgtatcttgatgcttaaaaatattatcttagaagcagaaaaataagaatc 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cctttttgtctgtatcttgatgcttaaaaatattatcttagaagcagaaaaataagaatc 529
Query: 624 tttgcttccatggtttatttattgtttctaggtcaaccatcttta 668
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 tttgcttccatggtttatttattgtttctaggtcaaccatcttta 484
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 668
Length of database: 1067
Length adjustment: 10
Effective length of query: 658
Effective length of database: 1057
Effective search space: 695506
Effective search space used: 695506
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no154_l14.g1 MSMg01no154_l14.g1 CHROMAT_FILE:
MSMg01no154_l14.g1 PHD_FILE: MSMg01no154_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:26 2005
(637 letters)
>mm_chr7_117466520_117467556
Length = 1037
Score = 1170 bits (605), Expect = 0.0
Identities = 631/641 (98%), Gaps = 4/641 (0%)
Strand = Plus / Plus
Query: 1 actccacagaaatgtttgagggacatttgaacacttctctcaatgactattctctttaga 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 actccacagaaatgcttgagggacatttgaacacttctctcaatgactattctctttaga 256
Query: 61 acccacctgtgtcacacacacacctgtgtgaagtctttcctaactattctggtacttaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 acccacctgtgtcacacacacacctgtgtgaagtctttcctaactattctggtacttaat 316
Query: 121 atgctgaagaatagaactttgaaaactccccaagaaaccactcacttgccccttgttact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 atgctgaagaatagaactttgaaaactccccaagaaaccactcacttgccccttgttact 376
Query: 181 acaaatgaagttgcaggcatcagagctttctaaggagagactgtgtcttatttcagttat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 acaaatgaagttgcaggcatcagagctttctaaggagagactgtgtcttatttcagttat 436
Query: 241 tgatatggatggaatctaggcacaattatctg---ataatccatgctgctttgttatctg 297
|||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct: 437 tgatatggatggaatctaggcacaattatctgataataatccatgctgcttcgttatctg 496
Query: 298 ctcattctcttattacagacagtatcccactgtatcaatactccac-acttactcattca 356
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 497 ctcattctcttattacagacagtatcccactgtatcaatactccacaacttactcatttg 556
Query: 357 cctgttgacagatagggagcctttccatgtttttggctattgtatgtgaacaagttatga 416
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 557 cctgttgacagatagggagcctttccatgtttttggctattgtatgtgaacaagctatga 616
Query: 417 aggcgtatgttgcaagtgtgtgcgtagactgaagctttcatctctcttataaactgctga 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 aggcgtatgttgcaagtgtgtgcgtagactgaagctttcatctctcttataaactgctga 676
Query: 477 gaatgaagtgaccgagtcacagatgtgcattggtggttggttactgacatcacaactatc 536
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 677 gaatgaagtgaccgagtcacagatgtgcattggtggttggttactgatatcacaactatc 736
Query: 537 atgatgttcatttctatcacgggtaatcaattaatccccccttctttgccctgtggtcag 596
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 atgatgttcatttctatcacgggtaatcaattaatccccccttctttgccctgtggtcag 796
Query: 597 cctagctaggggttcaccaatttttattgctcttgaagagc 637
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 797 cctagctaggggttcaccaatttttattgctcttgaagagc 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
