BAC Information

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BAC

Clone NameMSMg01-154L19
Chromosome7 (Build37)
Map Location 11,108,133 - 11,108,751
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042859, LOC100042120, LOC100042126, LOC100042139, LOC100042894, Vmn2r47, 2810047C21Rik, LOC665625, LOC545911, EG625580, LOC100042163, LOC625605, EG434117, EG628152, LOC100042921, Vmn2r52, LOC665663, V1re11, LOC628521, LOC628525, LOC100042206, Nlrp4d, LOC100042214, V1re10, Zik1
Downstream geneEG628580, V1re9, V1rl1, EG628596, Nlrp4b, LOC333184, V1re13, BQ559217, LOC637237, LOC236479, EG665879, Zscan4b, LOC665793, EG665798, Gm397, Zscan4-ps1, LOC635187, LOC100042997, LOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-154L19.T7 (MSMg01no154_l19.b1)MSMg01-154L19.TJ (MSMg01no154_l19.g1)
ACCAG355948AG355949
length7261,382
length of high quality
(start - end)		619 (63 - 681)---
definitionCHROMAT_FILE: MSMg01no154_l19.b1 PHD_FILE: MSMg01no154_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:27 2005CHROMAT_FILE: MSMg01no154_l19.g1 PHD_FILE: MSMg01no154_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:27 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAG
AGTATATTCTAGAGAACATAGGAATTATCAAAGATAATAGATTTGGAAAG
AGGCACAAAACAAAATGAAAGACATAGATAGCTGACAATGGCCTGAAAGA
TAGGAAGGTTGCTGCTAAGGAGCCTGAACTAATGAAAACACAGTCAGCCA
AAGAGTTTCTAGGAAGAAAATGGAGATGCAATAGAGAGTACAGAAATATG
ATGGGGTATAATGGACTTCTAAATTTCAGAGTTGCAGAATGATCATGGAT
ATAGAAGATGCATTTACATTATGTGCAGTCTCTGAAACCTTTTCTGACCC
TAGATATTTATCTATAATAAAAGCATTTTCAAGGCCTTCTGGAGGATATT
ACACAAATACCAGTAGCTTTAAAATTCTTATGCCACCCACTTTTATGCAC
CATAATACTGTCAACATGCCCAGTGATTTTCTTGATGTTTAGATGTTAGA
TTTAGAGCTGAATGATATAAAGTCTGAGCCTTTTCTTGGCCCTACATCAT
GAGGCTCATTATTTTGTGTAGTTAATGTTTTATAATGATGAAGACCTAAC
ATCAGATGGATAGCATGCTATGCTTAGTTCTCCTTTTCTAGGCAACAATA
CATGAATCTGTGCATAGTCTGAAGCTGTAGACTCTTCCTAAAATCTGTAA
TTATTGCCAAATGCCATTTCCACATT

GCTTTGTTGGGGTANNGGCCCTTGANGCGAGCCCGCCCTCGNGTTTTGCT
NAGCACATGCTTANNGGTNNGACCACCTTATTANGNAANGGGTATTTNCC
GNNGCNGAANTTNCTATTTATTCGTTGNACGTTACCACCANATTCGNANA
ANNACGACGANANAATTCCACACCTCTCTTACGNANANACAANATAANAN
ACGACACACGATACGTACGCGTCATTCGCGTANACGCGCACGCGCGNANA
CGCGNACGCGCGTACACGCGTACGCGCGTACGCGTACACTGTCATTCCAC
TCTCCCCCTCCCCCNTTCTCNTCGNCNNTTCGNCCCCCNTCTTTCNTTNC
TTTCTCCCTCACTTGCTCGCTCCCTCCCCTCCTCGTTCTGTTCCTCTTCC
CTCTCCCTCCTCTCCTACNGCATTCTCTCTTATTTCTCTTTCTCCTTCTC
TCCTCGTTTGTCCTCTACCTCTTTCCTTCTACTCTCCATACGCCTNACTA
NCTCGCTCTCTTCTTGTTNCTCTGTCATCCACCCTCTTTCCATCTCTTCT
CCTACCTCCGTCCTCTNATTTCTTCGCTCTCCTTGCTCATTCCGCTTCTC
TCTTCCTTTTGTCTCTCTCTCCNCCTCTTTACCCCTTCTCTCTTTTTTTT
TCTCTCTATTCTCCTCCCTTCTCTNTCTCTCCTTCCCCCGCCCCCTCTGC
CTCCCCTCTTCTCTTTCTCGCCCCTCTTCCCTCTTCCTCTTCTCCCTTCT
CCGCTCTCTCTGCCTCTCTTCTTATCTCTCTTTCTCTCCGTTTCCCCTCT
ATCTTCGCTTTGTTACCTTGCTCATCCCCCTTCTCCCTTCTCTCTCTTCT
CTTCTTGCGTTCCCCTCTCCGCTGTCTACACCTCTNCTTCTCNCGCTCTN
TCCGTTCTCTCTCTCCCTCTCTCCCCCCCTTTCTTTATCTCTCCCTCTAC
TCTGCTGCCCTCTTCTCCCTCCTCGCACCTCTGTCTCCCTCCTATATCTC
TTATTTTCACTCCCTCATTTCGTGCTTCTCNCTTCACCTCTTCTTTCTCC
TCTCTCTGTCGCGTTGTTATCCCCTTCTCTCTCTCCTCTCTTTCTCCCTT
ATCTCCCTCTCTCTTCTTCTCCTATCTCTCTCCCCCTCTCTCCTCACTCC
TCTCCTCTTGTTCTCTTTCTCCCTTATTATCTCTTCTCCTCCCTCTTTCT
CCCCCTTCTCTTCGTTTATCTCCCTCCCCCCTCTTATCCGCGCGATNCGC
CCTCTCTCACTCTCTCTCTCTTATATATGTTTCCCTNTCTCTCCCCTCCA
CANCTTTATGCTTTNCTCTGCCTCNCTCTCCACTATTTTCTCCTTTNCCC
CTCCANCTCCACCTATTTNCTTCTCCTCTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no154_l19.b1 MSMg01no154_l19.b1 CHROMAT_FILE:
MSMg01no154_l19.b1 PHD_FILE: MSMg01no154_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:27 2005
         (619 letters)



>mm_chr7_11107933_11108951
          Length = 1019

 Score = 1174 bits (607), Expect = 0.0
 Identities = 616/619 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaacataggaattatcaaagataatagatttggaaagaggcacaaaacaaaatgaaaga 60
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 819 agaacataggaattatcaaagataatagatttgggaagaggcacaaaacaaaatgaaaga 760

                                                                       
Query: 61  catagatagctgacaatggcctgaaagataggaaggttgctgctaaggagcctgaactaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 catagatagctgacaatggcctgaaagataggaaggttgctgctaaggagcctgaactaa 700

                                                                       
Query: 121 tgaaaacacagtcagccaaagagtttctaggaagaaaatggagatgcaatagagagtaca 180
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 699 tgaaaacacagtcagccaaagagtttctagggagaaaatggagatgcaatagagagtaca 640

                                                                       
Query: 181 gaaatatgatggggtataatggacttctaaatttcagagttgcagaatgatcatggatat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 gaaatatgatggggtataatggacttctaaatttcagagttgcagaatgatcatggatat 580

                                                                       
Query: 241 agaagatgcatttacattatgtgcagtctctgaaaccttttctgaccctagatatttatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 agaagatgcatttacattatgtgcagtctctgaaaccttttctgaccctagatatttatc 520

                                                                       
Query: 301 tataataaaagcattttcaaggccttctggaggatattacacaaataccagtagctttaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 tataataaaagcattttcaaggccttctggaggatattacacaaataccagtagctttaa 460

                                                                       
Query: 361 aattcttatgccacccacttttatgcaccataatactgtcaacatgcccagtgattttct 420
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 aagtcttatgccacccacttttatgcaccataatactgtcaacatgcccagtgattttct 400

                                                                       
Query: 421 tgatgtttagatgttagatttagagctgaatgatataaagtctgagccttttcttggccc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgatgtttagatgttagatttagagctgaatgatataaagtctgagccttttcttggccc 340

                                                                       
Query: 481 tacatcatgaggctcattattttgtgtagttaatgttttataatgatgaagacctaacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tacatcatgaggctcattattttgtgtagttaatgttttataatgatgaagacctaacat 280

                                                                       
Query: 541 cagatggatagcatgctatgcttagttctccttttctaggcaacaatacatgaatctgtg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 cagatggatagcatgctatgcttagttctccttttctaggcaacaatacatgaatctgtg 220

                              
Query: 601 catagtctgaagctgtaga 619
           |||||||||||||||||||
Sbjct: 219 catagtctgaagctgtaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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