BAC Information

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BAC

Clone NameMSMg01-155B21
Chromosome7 (Build37)
Map Location 38,650,205 - 38,788,446
singlet/doubletdoublet
Overlap geneEG627844, C80913
Upstream geneLOC100043874, Zfp536, LOC100043453
Downstream geneCcne1, 1600014C10Rik, Plekhf1, Pop4, LOC668519, LOC100043464, 1700010N08Rik, EG627975, EG625594, EG627983, EG434171, LOC100043467
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155B21.T7 (MSMg01no155_b21.b1)MSMg01-155B21.TJ (MSMg01no155_b21.g1)
ACCAG356222AG356223
length752746
length of high quality
(start - end)
307 (63 - 369)386 (108 - 493)
definitionCHROMAT_FILE: MSMg01no155_b21.b1 PHD_FILE: MSMg01no155_b21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:57 2005CHROMAT_FILE: MSMg01no155_b21.g1 PHD_FILE: MSMg01no155_b21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:19:57 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,788,140 - 38,788,446)(38,650,205 - 38,650,590)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCAGTTATCTGTTGAAAATCTTTCCATTTTTCTTTCATGTTGGAGG
ATGTGTTTGCTGTGGCTATAGTAATGATGGATTCGTCAGTTTCTTGTTTC
AAGACTTCAAGATTCTACTCTGTTGTCTTCCACTGTGTGGCGTTTTATGC
TCTATAACCTTTGTTGCTTCTTTGAAGGCTATATGCCATCTCTCTGCCTT
GCACCTCCAGCTACACCCAGCATTCTAACCACATTGCTGTGCCCAGATGT
TCAGAAATACTGACTTACGTTGTGCTTAGTGTCTGTTTAATATTGGCTGT
GGTAATTTTAGAAACTTCAGTTGTATGGTTTTTCTTCTTTTTGACTCCCT
CCCTCTTCCTTCTTTTTCTGTCTGGTTAATGAATTTACGCCTTTGCACCT
TGCTTGGCAGGTGTTCTGCCCCTGACCTACATGCCCATTCAAAGCACTTT
CTTTTTTCTTTCTTTTTTCTTAACCCTCCTTTTTTTTTCCATCCAACTTT
CTTGTTTAAACTTTCCGCCTTTTTCCTCTCCCTTCCTTGAATCTACTTAT
CTCCTTCCTCTCCCCCCTTCCCTGTCCCCCCTTATTCACCCCCCCCTTCC
CTAATTTTACTCACCCCCTCTTTCTCCTTCTCCTTCCCCCCAACCCCCTT
TTATACTTTCTACTCCTTACACCCCCCCCCCTCTCCCCCCCCCCCCAAAT
CA
CACTGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAGGAAAATTTAGCCAAATCTGATC
CTCGTCAGTGGAGTCAAACTGAGTCTGTGACTCCATCTCCATCCACCCCC
ATGCAAGCACCCAGTGCCATGTAGGAGGAGTGGATGGGCCAAGAAAATTT
ACCTCTGCAAAATGAAGACAGACAAATGGCCAAGTCAACGTCACAGACAG
TGTTGAAGGACAATGTATGCAGAACCAGGCAAATCTTCACATGGCCTGCA
TGGTGACAATTGAGGTGATGTGCACGGACAGGACTGCGTGAAACAGAATA
GTACCTGACCCATCGTTCCTGGGCAGGGGACCTTGCACAAGAACCATATA
TTCTTCTTCTTTCTATTTTTTAGATTTATTTATTTATTTATTTTATTTAT
GTGAGTACACTGTCACTGTCTTCAGACACACCTGAAGAAGCCATCAGATC
CCATTACAGATGGTTGTGAGCCACCGTGTGGTTGCTGGGACTTGAACTCA
GGACCTCTGGAACAACAGTCCGCGCTCTGAATTGCTGAGCCCCTCTCTCC
CGCCCTCAAGATAATATATTCCGCCCCCCCAAAACCGTCCACATCATCTC
CCATCACGCCACAGATTGCCCCTTTGACCTAAAGACCACCTGCCTGCCGT
GTACCTGCCCTTATTACCTCGGACGACTCTTCTCCCCAGCTCGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_b21.b1 MSMg01no155_b21.b1 CHROMAT_FILE:
MSMg01no155_b21.b1 PHD_FILE: MSMg01no155_b21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:57 2005
         (307 letters)



>mm_chr7_38787940_38788646
          Length = 707

 Score =  578 bits (299), Expect = e-169
 Identities = 305/307 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttgaaaatctttccatttttctttcatgttggaggatgtgtttgctgtggctatagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ctgttgaaaatctttccatttttctttcatgttggaggatgtgtttgctgtggctatagt 448

                                                                       
Query: 61  aatgatggattcgtcagtttcttgtttcaagacttcaagattctactctgttgtcttcca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 aatgatggattcgtcagtttcttgtttcaagacttcaagattctactctgttgtcttcca 388

                                                                       
Query: 121 ctgtgtggcgttttatgctctataacctttgttgcttctttgaaggctatatgccatctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 ctgtgtggcgttttatgctctataacctttgttgcttctttgaaggctatatgccatctc 328

                                                                       
Query: 181 tctgccttgcacctccagctacacccagcattctaaccacattgctgtgcccagatgttc 240
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 327 tctgccttgcacctccagctacacccagcgttctaaccacattgctgtgcccagatgttc 268

                                                                       
Query: 241 agaaatactgacttacgttgtgcttagtgtctgtttaatattggctgtggtaattttaga 300
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agaaatactgacttatgttgtgcttagtgtctgtttaatattggctgtggtaattttaga 208

                  
Query: 301 aacttca 307
           |||||||
Sbjct: 207 aacttca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 707
Length adjustment: 9
Effective length of query: 298
Effective length of database: 698
Effective search space:   208004
Effective search space used:   208004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_b21.g1 MSMg01no155_b21.g1 CHROMAT_FILE:
MSMg01no155_b21.g1 PHD_FILE: MSMg01no155_b21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:19:57 2005
         (386 letters)



>mm_chr7_38650005_38650790
          Length = 786

 Score =  746 bits (386), Expect = 0.0
 Identities = 386/386 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggagtcaaactgagtctgtgactccatctccatccacccccatgcaagcacccagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtggagtcaaactgagtctgtgactccatctccatccacccccatgcaagcacccagtgc 260

                                                                       
Query: 61  catgtaggaggagtggatgggccaagaaaatttacctctgcaaaatgaagacagacaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 catgtaggaggagtggatgggccaagaaaatttacctctgcaaaatgaagacagacaaat 320

                                                                       
Query: 121 ggccaagtcaacgtcacagacagtgttgaaggacaatgtatgcagaaccaggcaaatctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggccaagtcaacgtcacagacagtgttgaaggacaatgtatgcagaaccaggcaaatctt 380

                                                                       
Query: 181 cacatggcctgcatggtgacaattgaggtgatgtgcacggacaggactgcgtgaaacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cacatggcctgcatggtgacaattgaggtgatgtgcacggacaggactgcgtgaaacaga 440

                                                                       
Query: 241 atagtacctgacccatcgttcctgggcaggggaccttgcacaagaaccatatattcttct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atagtacctgacccatcgttcctgggcaggggaccttgcacaagaaccatatattcttct 500

                                                                       
Query: 301 tctttctattttttagatttatttatttatttattttatttatgtgagtacactgtcact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctttctattttttagatttatttatttatttattttatttatgtgagtacactgtcact 560

                                     
Query: 361 gtcttcagacacacctgaagaagcca 386
           ||||||||||||||||||||||||||
Sbjct: 561 gtcttcagacacacctgaagaagcca 586


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 786
Length adjustment: 9
Effective length of query: 377
Effective length of database: 777
Effective search space:   292929
Effective search space used:   292929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)