BAC Information

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BAC

Clone NameMSMg01-155F13
Chromosome7 (Build37)
Map Location 140,147,578 - 140,267,317
singlet/doubletdoublet
Overlap geneZranb1, Ctbp2
Upstream geneGpr26, Cpxm2, 4631426J05Rik, LOC100043682, LOC100043683, Oat, Nkx1-2, 2310007H09Rik, A930008G19Rik, 2010208K18Rik, C430003P19Rik
Downstream geneLOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-155F13.T7 (MSMg01no155_f13.b1)MSMg01-155F13.TJ (MSMg01no155_f13.g1)
ACCAG356379AG356380
length776753
length of high quality
(start - end)
303 (71 - 373)405 (75 - 479)
definitionCHROMAT_FILE: MSMg01no155_f13.b1 PHD_FILE: MSMg01no155_f13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:14 2005CHROMAT_FILE: MSMg01no155_f13.g1 PHD_FILE: MSMg01no155_f13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:20:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(140,147,578 - 140,147,880)(140,267,043 - 140,267,317)
sequence
TTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTTTTTTTCATAGCTGTATCCTCATACTTAGAAAGGTCCATCCTC
AATATTGTGTCATGTGTGAAAGTGGGTTACCTTTCTAAAGTATAGTAAGG
TATTAAAATGTGCTTTTTTGTCAGCTACAAAAATATTTTTATATTTGTGC
TAATATTTCAGTTCTTATAACTTAATTCTCTGAAAAATCAGTATCTGAGG
CAGTTTCCATCTTGATGCCAGTTGTCTTTTTGGTCCCTTGCTAGAATCCT
GTGTACTGAGCCCAAGCTATCTTGCCCAATTGTAACTGTAGAAACATACC
TTGATGATATATTATTTGTCAGAATATGTTTGTCCATTTGGTTTTACAAG
CACCCTGTCCATTCCCCAAATATTGTGTAGGTTTTCTACATGAAACCACC
TGTAACAGGCCTGAGCAGATGTCTCCGTGACCCCGCCTTCCAAACCTTGA
CGACCCGACTCCAGATTCCCCATATCCATGTCCCAACACCCAAAGCCCTG
CCCCTATTATGTCTTCCCGCACCCCCCGAACCTCCCACGCTTCAGACAAC
AGGCACTCCGCCCTCTTTCCCCCCTCTTTCTTCCTGCTCCATCTCGACCC
GCCCCCCCACCTCTTCACCACTCCTCACTACCACTAACGTTTGTATTCCT
CACCCTCTCGCCCCCCCCTCAACCGTCTCTTACCCTTGCCCGCCCCCCAT
CCTTAAACCCCTTCCCTCTCTTTATT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGAGGGAACCTGCGTCACCCTGGGCC
AGGGCCCCTGCAGTTCTCAGGGAATGAATCAGAAGCATGTTGATGATTGA
TCAGGCCATGGGGACAAGTGGGGTTCCCTGGAGAAGGGTCCCAGCGTCCA
AGTTAGATTTGTTCTTTTCTCAAACACTAGTCACAGTGTTAACTGTTAAG
ACACAATCCATTTCCATAACCCAGGGACTTGGTAGTAAACTTAGACGGGA
CTCATTGGAGAGGGATGGAGTCTCATCTCGTGGAGACTGTGGCCATTTGT
GTCCAGCAGTGTTGGCAGCCCATAGCTTGGCCTTCTTGGAAACATTACTT
GGATGGTCATTGCTGAGGCACCCCTACCCTTCCCACATGCTTGTATCACC
AAAGTTCTCTGAATGCAGGGAGATGGCCTATTGTCTCCCGTGGTCACTAT
GGCCACATCTCTTCTGATAGTCTCGTGATGTCCCTTCTGATTCTTCCAGA
AGGTGAGCAAACCTGAGACTATCCCATAGGCAATTGCGTTTACCCTGTAC
TTTCCACCGCCTGAATGCACAGGCTCGACCCTGCCTTCCTACTTGCATAC
TGAGCTCCGCAAACCTGATCCCCTGTGTGTGAAACTCTGCCTATTCTCCC
CCTGCCCCCGCGAATGCTGCTCCTACCCTCTCAATCCCACGCCGTCCCTC
TCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no155_f13.b1 MSMg01no155_f13.b1 CHROMAT_FILE:
MSMg01no155_f13.b1 PHD_FILE: MSMg01no155_f13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:14 2005
         (303 letters)



>mm_chr7_140147378_140148080
          Length = 703

 Score =  563 bits (291), Expect = e-165
 Identities = 300/303 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtatcctcatacttagaaaggtccatcctcaatattgtgtcatgtgtgaaagtgggttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtatcctcatacttagaaaggtccatcctcaatattgtgtcatgtgtgaaagtgggttac 260

                                                                       
Query: 61  ctttctaaagtatagtaaggtattaaaatgtgcttttttgtcagctacaaaaatattttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttctaaagtatagtaaggtattaaaatgtgcttttttgtcagctacaaaaatattttt 320

                                                                       
Query: 121 atatttgtgctaatatttcagttcttataacttaattctctgaaaaatcagtatctgagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atatttgtgctaatatttcagttcttataacttaattctctgaaaaatcagtatctgagg 380

                                                                       
Query: 181 cagtttccatcttgatgccagttgtctttttggtcccttgctagaatcctgtgtactgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtttccatcttgatgccagttgtctttttggtcccttgctagaatcctgtgtactgag 440

                                                                       
Query: 241 cccaagctatcttgcccaattgtaactgtagaaacataccttgatgatatattatttgtc 300
           ||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 441 cccaagctagcttgcccaattgtaactgtagaaacataccttgatgatataagatttgtc 500

              
Query: 301 aga 303
           |||
Sbjct: 501 aga 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no155_f13.g1 MSMg01no155_f13.g1 CHROMAT_FILE:
MSMg01no155_f13.g1 PHD_FILE: MSMg01no155_f13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:20:14 2005
         (405 letters)



>mm_chr7_140266713_140267517
          Length = 805

 Score =  509 bits (263), Expect = e-148
 Identities = 272/275 (98%)
 Strand = Plus / Minus

                                                                       
Query: 131 agatttgttcttttctcaaacactagtcacagtgttaactgttaagacacaatccatttc 190
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 agatttgttcttttctcaagcactagtcacagtgttaactgttaagacacaatccatttc 546

                                                                       
Query: 191 cataacccagggacttggtagtaaacttagacgggactcattggagagggatggagtctc 250
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 545 cataacccagggacttggtagtaaacttagacgggactcattggagaggaatggagtctc 486

                                                                       
Query: 251 atctcgtggagactgtggccatttgtgtccagcagtgttggcagcccatagcttggcctt 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atctcgtggagactgtggccatttgtgtccagcagtgttggcagcccatagcttggcctt 426

                                                                       
Query: 311 cttggaaacattacttggatggtcattgctgaggcacccctacccttcccacatgcttgt 370
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 425 cttggaaacattacttggatggtcactgctgaggcacccctacccttcccacatgcttgt 366

                                              
Query: 371 atcaccaaagttctctgaatgcagggagatggcct 405
           |||||||||||||||||||||||||||||||||||
Sbjct: 365 atcaccaaagttctctgaatgcagggagatggcct 331


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 405
Length of database: 805
Length adjustment: 9
Effective length of query: 396
Effective length of database: 796
Effective search space:   315216
Effective search space used:   315216
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)