Query= MSMg01no156_b16.b1 MSMg01no156_b16.b1 CHROMAT_FILE:
MSMg01no156_b16.b1 PHD_FILE: MSMg01no156_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:09 2005
(319 letters)
>mm_chr7_67085758_67086475
Length = 718
Score = 561 bits (290), Expect = e-164
Identities = 308/314 (98%), Gaps = 1/314 (0%)
Strand = Plus / Plus
Query: 5 gaattccactgaagcagcatctagttctgaaggcaatgacaaataatatttaaaaaatga 64
||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 205 gaatttcactgaagcagcatctagttctgaaggcaatgacaaataata-taaaaaaatga 263
Query: 65 ctgctataactttcctcatttatttcttattttacatattttatatgcaatttaatcact 124
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 ctgctataattttcctcatttatttcttattttacatattttatatgctatttaatcact 323
Query: 125 ttaattttttaacctagtattttcaatataggatccttagattctatatcctatcaacta 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaattttttaacctagtattttcaatataggatccttagattctatatcctatcaacta 383
Query: 185 atagattaaaatatgtactatattcaataatttattatggaaatatttttttaaaaatcc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atagattaaaatatgtactatattcaataatttattatggaaatatttttttaaaaatcc 443
Query: 245 aaatcctaacatcagggagtcaacagcagaaagattacttattgcttgcaacctatattg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 444 aaatcctaacatcagggagtcaacagcagaaagattacttattgcttgcaacctatagtg 503
Query: 305 aactccctctattg 318
||||||||||||||
Sbjct: 504 aactccctctattg 517
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 718
Length adjustment: 9
Effective length of query: 310
Effective length of database: 709
Effective search space: 219790
Effective search space used: 219790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no156_b16.g1 MSMg01no156_b16.g1 CHROMAT_FILE:
MSMg01no156_b16.g1 PHD_FILE: MSMg01no156_b16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:09 2005
(565 letters)
>mm_chr7_67139338_67140302
Length = 965
Score = 884 bits (457), Expect = 0.0
Identities = 548/619 (88%), Gaps = 68/619 (10%)
Strand = Plus / Minus
Query: 1 aaggaaaacaggttagaattaattccaaaatgaataaaagtaaaaagaaagcataaagta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 aaggaaaacaggttagaattaattccaaaatgaataaaagtaaaaagaaagcataaagta 906
Query: 61 tctaggatttaattgataaaactactttttaaaaaatgaatac----------------- 103
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 tctaggatttaattgataaaactactttttaaaaaatgaatactatatataatattatat 846
Query: 104 -------------tatatatat----tatataatat-atatatatt---atataatatat 142
||||||||| |||||||||| ||||||||| |||||||||||
Sbjct: 845 tatatatataatatatatatataatatatataatataatatatattataatataatatat 786
Query: 143 atat----------------------atatcctagaatgaggcacacagattttctaaaa 180
|||| ||||||||||||||||||||||||||||||||||
Sbjct: 785 atatatatatatatatatatatattaatatcctagaatgaggcacacagattttctaaaa 726
Query: 181 tgcacatattaaataacactgaaaccagtataactaccatttaatgtatattccctgaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tgcacatattaaataacactgaaaccagtataactaccatttaatgtatattccctgaca 666
Query: 241 tgttgtgtttccatatcctactttggaatgcattaaggaaattttattttctttttcatt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 tgttgtgtttccatatcctactttggaatgcattaaggaaattttattttctttttcatt 606
Query: 301 gattattttttttctactttacaaaaaatacactcatttattagcca----ccccatagt 356
|||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 605 gattattttttttctactttacaaaaaatacactcatttattagttaattt----atagt 550
Query: 357 gccccctcttgtgagattttcttgttaatattttatatagtattgtattagcttttatta 416
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gccccctcttgtgagattttcctgttaatattttatatagtattgtattagcttttatta 490
Query: 417 ttttcaagaaagaattatgtttatgaatatattgaattattttaatcatgaatcagtagg 476
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 ttttcaagaaagaattatgtttatgaatatattgaattattttaatcatgaatcagtagg 430
Query: 477 catggaattctacagaaagtatttcaccataattatttctttgaatcagcatatcatgta 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 catggaattctacagaaagtatttcaccataattatttctttgaatcagcatatcatgta 370
Query: 537 ataaaagtatcatctataa 555
|||||||||||||||||||
Sbjct: 369 ataaaagtatcatctataa 351
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 55
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
