BAC Information

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BAC

Clone NameMSMg01-156E21
Chromosome7 (Build37)
Map Location 77,971,115 - 77,971,424
singlet/doubletsinglet
Overlap genenone
Upstream geneNr2f2, LOC100042833, B130024G19Rik, LOC100042838, LOC665486, LOC100041957
Downstream geneLOC665535
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156E21.T7 (MSMg01no156_e21.b1)MSMg01-156E21.TJ (MSMg01no156_e21.g1)
ACCAG357079AG357080
length737745
length of high quality
(start - end)
315 (45 - 359)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no156_e21.b1 PHD_FILE: MSMg01no156_e21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:24 2005CHROMAT_FILE: MSMg01no156_e21.g1 PHD_FILE: MSMg01no156_e21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACGTGTGAGTCATCCACGGCCATGTGACTTGTTTTGATTAATGAT
TTCCCCAGGGAGGCAATGTCTTTTGGAAAAGGGAAAGAAGCCTGAGAACC
AGCATTCTATTTTTCTGCCCTTCCCCCACCCCCCAGCACAGCAAACTCTG
TGTGACAATGAGATTTTTGGGCCAGGTGAAATGTCATGGGATGCTAAGTG
GACACAGAGACAGCAGCTGCTCAGAAGAATGTTCTGGAACACCACATGTT
GCTCCTGTTTGGTGAATATACTTTTATGTTCTGGGACATTTGGAAGCACA
GCAAAGTTTATTATTGCTGACCCCCGCCCCGGTTCATTCAAAGTCAGACC
TTACCTTAAGGGTTTCTTTGATTCTCTGCCTCACCCTTCTCTTCTGATAA
ATGGAAAAATAGCAGATTGCATCTGTCTCATATGACTGAAGAAAAGAAAA
ATGTACACATAAGATCTTGGGACAAAGCATTGTTTATAGTGACTATTCTT
CCAAAAAATGTTTAATAGATTGTACAATGGTGCCATTCTCAGAAATGTAT
GCTGTGCACTTTGCTCACATTTACTCCCTGGTTTTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TTAAAGATTTATTCATTAATATGTGTAAATACCCTGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCA
GAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCA
AATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGA
TCAAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGA
ACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAA
ATCAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATC
CAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAG
AAGGACACATGCTCCACCATGTTCATAGCAGCCTTATTTATAATAGCCAG
AAGCTGGAAAGAACCCAGATGCCCCTCAACACAGGAATGGATACAGAAAA
TGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAA
TTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGTCATCATCCTGAG
TGAGGTAACACATTCACAAAAGGAACTCACACAATATGTACTCACTGATA
AGTGGATATTAGCCCATAACCTAGGATACCCAAGATATAAGATAAAATTT
CCTAAACACTTGAAACTCAAGAAAAATGATGACTGAATTGTGTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_e21.b1 MSMg01no156_e21.b1 CHROMAT_FILE:
MSMg01no156_e21.b1 PHD_FILE: MSMg01no156_e21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:24 2005
         (315 letters)



>mm_chr7_77970911_77971624
          Length = 714

 Score =  578 bits (299), Expect = e-169
 Identities = 308/311 (99%), Gaps = 1/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacgtgtgagtcatccacggccatgtgacttgttttgattaatgatttccccag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacgtgtgagtcatccacggccatgtgacttgttttgattaatgatttccccag 264

                                                                       
Query: 65  ggaggcaatgtcttttggaaaagggaaagaagcctgagaaccagcattctatttttctgc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 ggaggcaatgtcttttggaaaagggaaagaagcctgagaaccagcattctatttt-ctgc 323

                                                                       
Query: 125 ccttcccccaccccccagcacagcaaactctgtgtgacaatgagatttttgggccaggtg 184
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 324 ccttcccccaccccccagcacagcaaactctgtgtgacgatgagatttttgggccaggtg 383

                                                                       
Query: 185 aaatgtcatgggatgctaagtggacacagagacagcagctgctcagaagaatgttctgga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaatgtcatgggatgctaagtggacacagagacagcagctgctcagaagaatgttctgga 443

                                                                       
Query: 245 acaccacatgttgctcctgtttggtgaatatacttttatgttctgggacatttggaagca 304
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acaccacatgttgctcctgtctggtgaatatacttttatgttctgggacatttggaagca 503

                      
Query: 305 cagcaaagttt 315
           |||||||||||
Sbjct: 504 cagcaaagttt 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 714
Length adjustment: 9
Effective length of query: 306
Effective length of database: 705
Effective search space:   215730
Effective search space used:   215730
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)