BAC Information

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BAC

Clone NameMSMg01-156I13
Chromosome7 (Build37)
Map Location 97,657,480 - 97,657,795
singlet/doubletsinglet
Overlap geneB230218P12Rik
Upstream genePrss23, LOC100040001, Me3, Ccdc81, l7Rn6, Eed, E230029C05Rik, EG384719, 2310010J17Rik, Picalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b
Downstream geneLOC666689, LOC621816, LOC100039943, Dlg2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-156I13.T7 (MSMg01no156_i13.b1)MSMg01-156I13.TJ (MSMg01no156_i13.g1)
ACCAG357249AG357250
length732756
length of high quality
(start - end)		320 (36 - 355)455 (77 - 531)
definitionCHROMAT_FILE: MSMg01no156_i13.b1 PHD_FILE: MSMg01no156_i13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:41 2005CHROMAT_FILE: MSMg01no156_i13.g1 PHD_FILE: MSMg01no156_i13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:21:41 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTTA
GCCTGTGCTGCTATCTTCTGAGCACTGCATTATACTAACTCTTATGTAAT
ATTATTTCAAAGTAAGACCTGCTTAAACATATTATGGCTGTAACTATGAA
TTATGTGTATTTTTGTCATCTGACCATCAAGAAATCAAGACATTTTATAA
GATTACAGTGAATGGTACAAGTGTTGTACAATTATATGACTTTAGATTAG
CTCCACTCTAATCTTTCAGAGCAAGTCCTCACACTGGCTTTTGTGTCAGC
AGCACCAATCACACATCAACGGGTGTAGCTTTGTGTCTCACTTCAAAAAC
TACTATATCACAGACTCGCCACCCAGGGCTCAGCAAATAGTGTCTTAATA
ATGCTTTTGCACGATTTTGAGGCATGCCAAAAGTGTGATCTAGGTGCTTA
GAAGTATGGCCTTTCAGAGAAATTAACATGGTGTTTGAATGTTACCCATG
AACTTGGAAGAGAATGGTATTTCTTTTTTCTTGCATATTGTAAACATTTG
GTTTAGTTCTTTAACAAGATGAGTGAACTTTTAACATTCTTAAGTCTATT
GAGAATCCATAAATTTTCAGATATTATGGAGTCCAGTTTCTTCTTTAAAT
AAATAGCATTCTGAAATATTTACCTGATCCTGCCTTTAGATATTATATGA
TGGTTTCTACCTGTGCTGCTGTGAATAAAGAN

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCATGGCTCTACCTAATGTTTGGC
TGTGCCTCTGCATCATCTTAAGGGACTCCTAATAGTTGGAACAGGGGCTG
TCTCTGACTCTTTGCCTGTTTTTGGGACCCTTTCTCTCATATTGGGTTGT
CCTATCCACAATATGAGGGGAGGTGCCTAGACTTACTGCTACTTGATATG
CCATGTTTGGTTGATATTCATAGGAGGCCTGCCCTTTCTTTTTTTTTTTT
CCATTTTTTATTAGGTATTTCGCTCATTTACATTTGCAATGCTATACCAA
AAGTCCCCCATAGCCACCCACCCCCTCTCCCCTACCCACCCACTCCCCTT
TTATGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCC
AATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATGCAT
ATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTTGT
TCCACCTATAGGGTTGCAAATCCCTTTAGCTTCTTTGGTTCTTTCTCTAG
CTCCTTAAATGGTGGCCATGTGATCCATCTCTTTCTCGACTGTGACCATC
CATTTTCTATTGTTTTGTTATTGCCTGCTCCTCTCTACTAGATTTGATAA
AGGATCAGATGGCTTCGCAGTGAACACGACTTACTCTAATATATTGTTTA
TTATAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no156_i13.b1 MSMg01no156_i13.b1 CHROMAT_FILE:
MSMg01no156_i13.b1 PHD_FILE: MSMg01no156_i13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:21:41 2005
         (320 letters)



>mm_chr7_97657276_97657995
          Length = 720

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttagcctgtgctgctatcttctgagcactgcattatactaactcttatgtaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttttagcctgtgctgctatcttctgagcactgcattatactaactcttatgtaa 264

                                                                       
Query: 65  tattatttcaaagtaagacctgcttaaacatattatggctgtaactatgaattatgtgta 124
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattatttcaaagtaagacctacttaaacatattatggctgtaactatgaattatgtgta 324

                                                                       
Query: 125 tttttgtcatctgaccatcaagaaatcaagacattttataagattacagtgaatggtaca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tttttgtcatctgaccatcaagaaatcaagacattttataagattacagtgaatggtaca 384

                                                                       
Query: 185 agtgttgtacaattatatgactttagattagctccactctaatctttcagagcaagtcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agtgttgtacaattatatgactttagattagctccactctaatctttcagagcaagtcct 444

                                                                       
Query: 245 cacactggcttttgtgtcagcagcaccaatcacacatcaacgggtgtagctttgtgtctc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cacactggcttttgtgtcagcagcaccaatcacacatcaacgggtgtagctttgtgtctc 504

                           
Query: 305 acttcaaaaactacta 320
           || |||||||||||||
Sbjct: 505 acctcaaaaactacta 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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