BAC Information

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BAC

Clone NameMSMg01-158A10
Chromosome7 (Build37)
Map Location 13,382,513 - 13,543,362
singlet/doubletdoublet
Overlap geneLOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik
Upstream geneEG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433, V1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128
Downstream geneZfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887, V1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-158A10.T7 (MSMg01no158_a10.b1)MSMg01-158A10.TJ (MSMg01no158_a10.g1)
ACCAG358351AG358352
length697694
length of high quality
(start - end)
322 (37 - 358)286 (67 - 352)
definitionCHROMAT_FILE: MSMg01no158_a10.b1 PHD_FILE: MSMg01no158_a10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:29 2005CHROMAT_FILE: MSMg01no158_a10.g1 PHD_FILE: MSMg01no158_a10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:23:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,382,513 - 13,382,808)(13,543,077 - 13,543,362)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCAG
ATGCATAATAAGGCAGGAGACTCCAGGGGAATGCTTTTCATACACATTAC
ATCTGCACAGCTCTTCTCCAGTATGAGTCCTATGGTGAAAAACAAAGAAA
GAACGGAGGCTGGTGGACTTCCCAGAATGGACACATCACAGTCAGCATCC
CCCATATGGGTCCTTTCATGCTTCATGAAAGCACAGAGAACACTGAAGGA
TCCCTGTACTTAATGAACTCTGAAGGCTTTCCCACATTTACCACGACTTG
AAGGACTCGTCTCCCACAGGAATTCTTTGATGCACAAGGATTCTCCAGTA
ATAGGCCTCTTTCCACTGCACGACTCCTCTGGTGCCCAGTGAAATGAGAT
TACTGACTGAAGAACGCTTGGCATTCACTGCAAGCATAACATTCATTTCC
AAAGTCACTTCTGTTTTCCAGGGTTTATGTGCTCCAATCAGAGACCACCT
CACATCTTTCTCTGCATCATTGCCTTTGCAATAACTGCACGTTATAGATA
GAGATACACAGAACCCTTGTGCAGGAGGGACAAGTTCATTTCTATCCAGC
GTGCTATCCTTTAGAGCCTTTCTGTCAGGGACTGAAATATTCATATAACT
GAAACAATTAAGTATACTTTGCTGAAGGCACGCTTTTTCTAAAAGGA
GCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTGTTGGGGCTCAAACCTAGGGCCTTGCATAGG
GTAGCCAAACATTCTACAATTGAGCTACATTCTCATTCCTGGTTGCAAAG
ATGAGATGAGATCCCTCTGGTCTGTCAGCCGTGGGTTGACCTAAGAGAAA
GCTAACTACCCATCTATCTTCTCTTTTCCCTGTGATTTGCATCTTCCAAG
GACTCTGTGATTTCACAGAGTAAAGAATCCTGGGTGCTTAACGAGACAGA
TGTGTCTCTAGTTACAAGAGAAGCCAACAGGGAGTCCAGGCTTGGTGAAT
GGGATTTTTTTTCTCCACCCCCCTCGTGCTAGGCATCCTTCTGTAGCCAC
TAATGTTTACCCCCTGGGGCCGTGGCCACTTAGTCTTGACTCTCCGCTAA
CTTATTTCTACTGACTTCTAGTCCCTAGATGATGTCCACTACTTGAGTTG
TTTTACCTAGTCCCTCCTTCTTTCTTCTTTTTCTTTTTTCTTTGTTTTTT
TCTTTTCTTTCATTCTTTCTTTTTGACATAGGGTTTCTCTGTGTAGCCCT
GGCTTCCTAGAACTCAATCTGTAGAGCAGGCTGGCCTCGAACTTCCAAGA
GATCCACTCTACCTCTGTTTCCTAAGTTCAAGTAGAAAAGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no158_a10.b1 MSMg01no158_a10.b1 CHROMAT_FILE:
MSMg01no158_a10.b1 PHD_FILE: MSMg01no158_a10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:29 2005
         (322 letters)



>mm_chr7_13382309_13383030
          Length = 722

 Score =  565 bits (292), Expect = e-165
 Identities = 295/296 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcagatgcataataaggcaggagactccaggggaatgcttttcatacacattac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcagatgcataataaggcaggagactccaggggaatgcttttcatacacattac 264

                                                                       
Query: 65  atctgcacagctcttctccagtatgagtcctatggtgaaaaacaaagaaagaacggaggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atctgcacagctcttctccagtatgagtcctatggtgaaaaacaaagaaagaacggaggc 324

                                                                       
Query: 125 tggtggacttcccagaatggacacatcacagtcagcatcccccatatgggtcctttcatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tggtggacttcccagaatggacacatcacagtcagcatcccccatatgggtcctttcatg 384

                                                                       
Query: 185 cttcatgaaagcacagagaacactgaaggatccctgtacttaatgaactctgaaggcttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttcatgaaagcacagagaacactgaaggatccctgtacttaatgaactctgaaggcttt 444

                                                                   
Query: 245 cccacatttaccacgacttgaaggactcgtctcccacaggaattctttgatgcaca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 445 cccacatttaccacgacttgaaggactcgtctcccacaggaattctttgacgcaca 500


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no158_a10.g1 MSMg01no158_a10.g1 CHROMAT_FILE:
MSMg01no158_a10.g1 PHD_FILE: MSMg01no158_a10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:23:29 2005
         (286 letters)



>mm_chr7_13542804_13543489
          Length = 686

 Score =  553 bits (286), Expect = e-162
 Identities = 286/286 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgttggggctcaaacctagggccttgcatagggtagccaaacattctacaattgagct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tgtgttggggctcaaacctagggccttgcatagggtagccaaacattctacaattgagct 500

                                                                       
Query: 61  acattctcattcctggttgcaaagatgagatgagatccctctggtctgtcagccgtgggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 acattctcattcctggttgcaaagatgagatgagatccctctggtctgtcagccgtgggt 440

                                                                       
Query: 121 tgacctaagagaaagctaactacccatctatcttctcttttccctgtgatttgcatcttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tgacctaagagaaagctaactacccatctatcttctcttttccctgtgatttgcatcttc 380

                                                                       
Query: 181 caaggactctgtgatttcacagagtaaagaatcctgggtgcttaacgagacagatgtgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 caaggactctgtgatttcacagagtaaagaatcctgggtgcttaacgagacagatgtgtc 320

                                                         
Query: 241 tctagttacaagagaagccaacagggagtccaggcttggtgaatgg 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tctagttacaagagaagccaacagggagtccaggcttggtgaatgg 274


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)