BAC Information

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BAC

Clone NameMSMg01-159C02
Chromosome7 (Build37)
Map Location 62,570,590 - 62,571,251
singlet/doubletsinglet
Overlap genenone
Upstream geneMrps33p, LOC622146, Luzp2
Downstream geneLOC668796, Siglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2, p
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159C02.T7 (MSMg01no159_c02.b1)MSMg01-159C02.TJ (MSMg01no159_c02.g1)
ACCAG359155AG359156
length737737
length of high quality
(start - end)
665 (46 - 710)298 (75 - 372)
definitionCHROMAT_FILE: MSMg01no159_c02.b1 PHD_FILE: MSMg01no159_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:47 2005CHROMAT_FILE: MSMg01no159_c02.g1 PHD_FILE: MSMg01no159_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCGCGGA
ATTCATTAAAACTTTTACGCAAAACTTATGTAGCTCAATTTGTGAAAGAA
TTATCATGCATATGAGCCATATGGATCCACATTTTCTCTGCCTGTAAAAG
TATAGAGTAGAAGAAATGGCATCATTAATGCAGGAAATAAAATTGTGGCA
CATAACCCAGAGTATTAATGAGCCCAGCAGAGACAGGCACGCAGAGGGAA
GGGTGAGCAGCAAATGAAAGAAGTGAAAGGGAAGATACAAACAGTTCAGC
TGTCTCTAGCATACAGTCTTAGATGAATATTATTGAGGGCGTTATGATTC
AAGGGAGAATGACTATCACTGTTGTGCAGTTAATGCTCATTATGAACATC
ACTGGGTGTTGCTGAAAATTCTCAAGTTCAGAAGGAACATAGACTGAAAT
TTCTAGAAAAACTTCATCAATGCATACAATATTTGAGGAAAGTATGTTAA
AACTATAAAGTACCTTTAAAATAAATTAAGGTAAAATAAATGAGTAATTG
CAGCATACATGGCAACTTCTTGTCTAATATCTGGACTGCACTTACATTTT
CATGCCAACAGAGATGAGAAAAAGCACAAACATGCATTCTCTTCCCATGT
GTGTCTAAGTGACTCATGACTGAAGGCAATTGATTTAGTTACCCACTTAC
TTTACTGTGTTTTCTGTAACACTTGAAATCTCTCAAN
AATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGA
GAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAAT
CAGTCTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCA
GCAATACCTCTCCTGGGCATATATCCACAACACGCCCCAACTGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCTTTATTTATAATAGCCAGAA
GCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATG
TGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAATGAATGAATT
TATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACACATCCACAAAGGAACTCACACAATATGTACTCACTGATAAGT
GGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCT
AAACACATGAAACTCAAGAAAAATGAAGACTGAAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_c02.b1 MSMg01no159_c02.b1 CHROMAT_FILE:
MSMg01no159_c02.b1 PHD_FILE: MSMg01no159_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:47 2005
         (665 letters)



>mm_chr7_62570387_62571451
          Length = 1065

 Score = 1149 bits (594), Expect = 0.0
 Identities = 645/662 (97%)
 Strand = Plus / Minus

                                                                       
Query: 4   gaattcattaaaacttttacgcaaaacttatgtagctcaatttgtgaaagaattatcatg 63
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 865 gaattcattaaaacttttatgcaaaacttatgtagctcaatttgtgaaacaattatcatg 806

                                                                       
Query: 64  catatgagccatatggatccacattttctctgcctgtaaaagtatagagtagaagaaatg 123
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||
Sbjct: 805 catatgagccatatggatgcacattttctctgcctgtaaaagtatagagtagaagcaatg 746

                                                                       
Query: 124 gcatcattaatgcaggaaataaaattgtggcacataacccagagtattaatgagcccagc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcatcattaatgcaggaaataaaattgtggcacataacccagagtattaatgagcccagc 686

                                                                       
Query: 184 agagacaggcacgcagagggaagggtgagcagcaaatgaaagaagtgaaagggaagatac 243
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 agagacaggcacacagagggaagggtgagcagcaaatgaaagaagtgaaagggaagatac 626

                                                                       
Query: 244 aaacagttcagctgtctctagcatacagtcttagatgaatattattgagggcgttatgat 303
           ||||||||||||||||||||||||||||||||||||||| |  | |||||||||||||||
Sbjct: 625 aaacagttcagctgtctctagcatacagtcttagatgaaaagcagtgagggcgttatgat 566

                                                                       
Query: 304 tcaagggagaatgactatcactgttgtgcagttaatgctcattatgaacatcactgggtg 363
           ||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||
Sbjct: 565 tcaagggagaatgactatcactgctgtccagttaatggtcattatgaacatcactgggtg 506

                                                                       
Query: 364 ttgctgaaaattctcaagttcagaaggaacatagactgaaatttctagaaaaacttcatc 423
           |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 505 ttgctgaaaattctcaagttcagaaggaacataggctgaaatttctagaaaaacctcatc 446

                                                                       
Query: 424 aatgcatacaatatttgaggaaagtatgttaaaactataaagtacctttaaaataaatta 483
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aatgcatgcaatatttgaggaaagtatgttaaaactataaagtacctttaaaataaatta 386

                                                                       
Query: 484 aggtaaaataaatgagtaattgcagcatacatggcaacttcttgtctaatatctggactg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggtaaaataaatgagtaattgcagcatacatggcaacttcttgtctaatatctggactg 326

                                                                       
Query: 544 cacttacattttcatgccaacagagatgagaaaaagcacaaacatgcattctcttcccat 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacttacattttcatgccaacagagatgagaaaaagcacaaacatgcattctcttcccat 266

                                                                       
Query: 604 gtgtgtctaagtgactcatgactgaaggcaattgatttagttacccacttactttactgt 663
           |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct: 265 gtgtgtctaagtgactcatgactgaaggtaattgatttagttacccacttaccttactgt 206

             
Query: 664 gt 665
           ||
Sbjct: 205 gt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 665
Length of database: 1065
Length adjustment: 10
Effective length of query: 655
Effective length of database: 1055
Effective search space:   691025
Effective search space used:   691025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)