BAC Information

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BAC

Clone NameMSMg01-159D13
Chromosome7 (Build37)
Map Location 52,686,246 - 52,686,557
singlet/doubletsinglet
Overlap geneRuvbl2
Upstream geneLrrc4b, 0610012D14Rik, Josd2, 2310044H10Rik, 1700021P22Rik, Mybpc2, Spib, Pold1, Nr1h2, Napsa, Kcnc3, Myh14, 1700023D19Rik, Zfp473, Vrk3, EG628904, Atf5, Nup62, Il4i1, Tbc1d17, Akt1s1, Pnkp, Ptov1, Med25, Fuz, Ap2a1, Stk22s1, Cpt1c, Prmt1, Bcl2l12, Irf3, AI480556, Rras, Prr12, Prrg2, Nosip, Rcn3, Fcgrt, Rps11, Rnu35b, Rpl13a, Rnu35a, Rnu34, Rnu33, Rnu32, Flt3l, Aldh16a1, Pih1d1, Slc17a7, Gm581, LOC100039953, Tifp39, BC050196, Dkkl1, Tead2, Cd37, Slc6a16, 1700039E15Rik, Trpm4, LOC100040970, Hrc, 2410127E16Rik, Mtag2, Lin7b, Snrp70, Kcna7, Ntf5, LOC100040019, Lhb
Downstream geneGys1, Ftl1, Bax, Dhdh, Nucb1, Tulp2, Myd116, Plekha4, Hsd17b14, Bcat2, Fgf21, Fut1, Izumo1, Rasip1, 5430432N15Rik, Fut2, Sec1, Gm484, Car11, Dbp, Sphk2, Rpl18, 4930403C10Rik, Spaca4, Sult2b1, EG545963, Lmtk3, Pscd2, Kcnj14, Grwd1, Grin2d, Kdelr1, Syngr4, Tmem143, Emp3, BC013491, LOC677321, Abcc6, Nomo1, Kcnj11, Abcc8, Ush1c, Otog, Myod1, Kcnc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159D13.T7 (MSMg01no159_d13.b1)MSMg01-159D13.TJ (MSMg01no159_d13.g1)
ACCAG359223AG359224
length701701
length of high quality
(start - end)		316 (386 - 701)282 (83 - 364)
definitionCHROMAT_FILE: MSMg01no159_d13.b1 PHD_FILE: MSMg01no159_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:54 2005CHROMAT_FILE: MSMg01no159_d13.g1 PHD_FILE: MSMg01no159_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:24:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNAAAAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCATCAGCCAGACACAGGGATCCGTGCCTGTGATCACAG
CACTTTGGGAGGAGGACGAGTTAAAAGTCATGCTTAGCTACACGGTAAGT
TCAGGGCCAGCCTATAGGAAACTGCCTGGAGAAGAAAAACAAGGCCAGGC
ACGGTGGTGCACAGCACTCGGAAGGCAGAGGCAAGGGGATCCCTGCGAGT
TCGAAGCCAATCTGGTCTACACAGGCAGGTCTACTTAGTCTAGCCAAGTA
GAAAGATCAGCGTCCACCAAGGGCCTGCAGTTGGAGCCCATAGTCCTCTA
CTGTGTCTTAGAAGTGCTGAGTGACCGCTGCCCAAGTGGGTGTGGCCTCT
TGCACAGCTGGCATCCTCCTCCTGGGAGCCGCCCTGCCCTGCCCACCTTG
CTACAGGTGGTGAGGGAAGCTCGCTCGCTACACAGCTGCTCTGAGAGCTG
GTCTCCTCAATGGGGATAGGATGACTGACTCTCCACCTCCCAAGGTCACA
GGAGACTTCCAGCACCACTTCCAGCACTCATGAATCTGATGGCTTGAGGC
CTGAGGCACACCAGGTAAGAGGAAGGCCTGGTGCACCCTCAGAGAGCATG
TGACTAACATGCACTTGTGTGCCGGACACATGGTTCCGATGTTCCTCAAA
G

NNTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGAACAGGATG
GCCTCAAACTCACAGATTCGCCTACCTCCGCCTCCCGACAGTTAGGATTA
TAGGTGTGTCCCACTACACCCCAGGGGCTTGAATATGGTTGCCTCAGGGA
GTGGTACTATTAGGACATGTGGCCTTGTTGGAGGAAATGTGAGACCCTTC
TCCTTGCTGCCTGAAAGCCAGTTTTTTCCTGTTTGCATTCAAACAAGATG
CAGAAATCTTAGCTCCTATAGCAGTGTCTGCCTGGAAGCTGCCATGGTGA
TAATGAACTGATTCTTGGTTCCCCCCACCCCCGCCCCAATTAAATGTTGA
CTTTTATAAGGATTGCCTTGCCCATGATATCTCTTCCCAACAATGGAAAC
CCTAAGAAGCCCAGTTAATACAACTTTTATTAATTATTATATCTGTTGGT
AGACATTTGAGTTATTTATGCATTTTATCTATTAACTGCTGTGTATTTTA
ACATACAATTTTTGGTCTGTTTTTAATTCTCTGTGGTGTATATTTGAGTG
TGGGTGTATGCCTGTGCATGTATGTGCATGTGCGTGCGTTGCGTGTGTGT
GTGTGTGTGTGTGTATGTTTGATTTTTGTTATTCCTTCCTCCCTCTCCTT
T
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_d13.b1 MSMg01no159_d13.b1 CHROMAT_FILE:
MSMg01no159_d13.b1 PHD_FILE: MSMg01no159_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:24:54 2005
         (316 letters)



>mm_chr7_52686046_52686757
          Length = 712

 Score =  565 bits (292), Expect = e-165
 Identities = 309/316 (97%), Gaps = 4/316 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtgggtgtggcctcttgcacagctggcatcctcctcctgggagccgccctgccctgccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtgggtgtggcctcttgcacagctggcatcctcctcctgggagccgccctgccctgccca 260

                                                                       
Query: 61  ccttgctacaggtggtgagggaagctcgctcgctacacagctgctctgagagctggtctc 120
           ||||||||||||||||||| ||||||   || ||||||||||||||||||||||||||||
Sbjct: 261 ccttgctacaggtggtgagcgaagct---tc-ctacacagctgctctgagagctggtctc 316

                                                                       
Query: 121 ctcaatggggataggatgactgactctccacctcccaaggtcacaggagacttccagcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 ctcaatggggataggatgactgactctccacctcccaaggtcacaggagacttccagcac 376

                                                                       
Query: 181 cacttccagcactcatgaatctgatggcttgaggcctgaggcacaccaggtaagaggaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 cacttccagcactcatgaatctgatggcttgaggcctgaggcacaccaggtaagaggaag 436

                                                                       
Query: 241 gcctggtgcaccctcagagagcatgtgactaacatgcacttgtgtgccggacacatggtt 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 437 gcctggtgcaccctcagagagcatgtgaccaacatgcacttgtgtgccggacacatggtt 496

                           
Query: 301 ccgatgttcctcaaag 316
           || |||||||||||||
Sbjct: 497 ccaatgttcctcaaag 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 712
Length adjustment: 9
Effective length of query: 307
Effective length of database: 703
Effective search space:   215821
Effective search space used:   215821
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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