BAC Information

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BAC

Clone NameMSMg01-159E20
Chromosome7 (Build37)
Map Location 136,394,751 - 136,395,037
singlet/doubletsinglet
Overlap geneLOC100043144
Upstream geneTgfb1i1, Slc5a2, BC017158, EG628781, Rgs10, LOC100043643, Tial1, Bag3, EG639030, Inpp5f, LOC100043651, 1110007A13Rik, Sec23ip, LOC210714
Downstream genePpapdc1a, Brwd2, LOC100043150, Fgfr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159E20.T7 (MSMg01no159_e20.b1)MSMg01-159E20.TJ (MSMg01no159_e20.g1)
ACCAG359277AG359278
length744742
length of high quality
(start - end)
318 (45 - 362)301 (74 - 374)
definitionCHROMAT_FILE: MSMg01no159_e20.b1 PHD_FILE: MSMg01no159_e20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:00 2005CHROMAT_FILE: MSMg01no159_e20.g1 PHD_FILE: MSMg01no159_e20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATCACGGTGGGAAAGTGGCAGACACAGCAGATGGAATAGCAAACCA
AGAGGTCACATCTTGAACAGTAAATGCAAAGCAGAGAAGGCAAAGTAGGA
GGCTGGGGGGTTAAGCTCTCAAGGACCACCTCCCTTGACAGGCTTCCTCT
AGAAAAGCTATGCCTCTAAAGCTACGTGGAAAAGTACCACCAAGTGGGGA
CTCGGTGTTCAACCACATGACCCTACTGCGGACATTCCCATTCAAACCAG
CACAACTGGGTTATATACCTTATCTCAAACGCAAACAACAAAAAACCATT
CATAACAAACATATAAATATTTACACAACANNCCTGGATTTACACAGGCT
GGCCACTTGGAAGTTTTCCCGCATTCTGAAAAAAAATGTATAGGAAATCT
ATAGTGATGTCTCATCAGTGGTCCTTCTGTATCATTACGCCTGGGAACAG
CCAAAGTGACATCTCTGCAGACCCTTCCAGTTTTAATTCTATTTAAGTTT
TACACGGCTTGGGAAGTACCCTCTATGACTGTGGAGAAGCCAGGATAGAT
TGGGCCATGCTGCTGCTGAAGACTTCAAGGGAGCAGTTAAATCTGGGGCT
GTCACACTGAATTGGTGGCTTCTGTTTGAGCCATCTGTTCCTGCCACGGA
GCATCCCATCCCATCCTGCCTGCCTGGCAGGGTCCCACTCCCAT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATGTGATAAAAGGCAATTATCCCACA
GGGACAGAGTTGAGACATATAGAAAGTGAATTAACTCCTTCATAGCTCCA
GAGGGGATGTTAGGCCACCAAAGGAGAAAAATGCATGAACGGGTAACTCA
ATAAATGTCATTTCTTAGAAATGCTGGCCATCTTTCTTTTCCAGTAGGAT
TTTGTTCAGTACCATCAAATCAGCCATGTGAATTGTCAGGGTACCACTTC
AAGCTCCACTTCAAGTACCACTTCCATGGAGAAACCTCTGTGTGGGAGCT
ACCAAACAGGTTCTTTTTTCCCCCCCCCCCCCCTACAACAGCATTCTGCA
GCATCCATGCAAAAACGCCCCACCAAAAAAAATGGGGAGCAGCCTTGTGC
TTAGCACACAGCTAATTCTGCTCCCAGGAAGTCTGTGCAGGGTCAGAAGC
CAGGCTCTGTCACTCAGGCTTGTCAGCAGCTGCCTTCTGAGGGACATTCC
AGTGCAGTTTGGGTTTGCATCTCTGCTGGCTGAGGGTGTGAAGCATCTTC
ATGTGGATTTTCACTATTCTCCCTTTTCTAAATGGGCATGAGGTGTCTAC
TCATATCTTTCAGCCATTTTTAATTGAGTTAATGCTTTTATTATTGCGTT
GAAGGAATTTATAATTATAATATGACTGTGTTCCTTGTTAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_e20.g1 MSMg01no159_e20.g1 CHROMAT_FILE:
MSMg01no159_e20.g1 PHD_FILE: MSMg01no159_e20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:00 2005
         (301 letters)



>mm_chr7_136394551_136395251
          Length = 701

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgtgataaaaggcaattatcccacagggacagagttgagacatatagaaagtgaatta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 catgtgataaaaggcaattatcccacagggacagagttgagacatatagaaagtgaatta 428

                                                                       
Query: 61  actccttcatagctccagaggggatgttaggccaccaaaggagaaaaatgcatgaacggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 actccttcatagctccagaggggatgttaggccaccaaaggagaaaaatgcatgaacggg 368

                                                                       
Query: 121 taactcaataaatgtcatttcttagaaatgctggccatctttcttttccagtaggatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 taactcaataaatgtcatttcttagaaatgctggccatctttcttttccagtaggatttt 308

                                                                       
Query: 181 gttcagtaccatcaaatcagccatgtgaattgtcagggtaccacttcaagctccacttca 240
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gttcagtaccaccaaatcagccatgtgaattgtcagggtaccacttcaagctccacttca 248

                                                          
Query: 241 agtaccacttccatggagaaacctctgtgtgggagctaccaaacagg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 agtaccacttccatggagaaacctctgtgtgggagctaccaaacagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 301
Length of database: 701
Length adjustment: 9
Effective length of query: 292
Effective length of database: 692
Effective search space:   202064
Effective search space used:   202064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)