BAC Information

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BAC

Clone NameMSMg01-159E22
Chromosome7 (Build37)
Map Location 37,296,799 - 37,297,114
singlet/doubletsinglet
Overlap genenone
Upstream gene2410004F06Rik, Nudt19, Rgs9bp, Ankrd27, Pdcd5, Dpy19l3, zfp507, LOC100043872, EG668988, LOC668507
Downstream geneTshz3, LOC100043874, Zfp536
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159E22.T7 (MSMg01no159_e22.b1)MSMg01-159E22.TJ (MSMg01no159_e22.g1)
ACCAG359281AG359282
length753750
length of high quality
(start - end)
320 (43 - 362)293 (74 - 366)
definitionCHROMAT_FILE: MSMg01no159_e22.b1 PHD_FILE: MSMg01no159_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:00 2005CHROMAT_FILE: MSMg01no159_e22.g1 PHD_FILE: MSMg01no159_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTTGGGATTATTACCCAGTTGAGAATGAAAACATGGATTGCCAGGGATG
GATTTTACATTGACCCCGAGTTTATAAAAACTTCTGGTGGCATTCACTCT
TGGTGTATGTGTAGTACATTGCTGCTTGCTGCATGCTTTCTTCCAATTAG
GTGGCATCATTTAACCTTCCCCATAGCCCAGAGTCTGGGTCCAACAAGTC
TCATTTGATTCGAAAGGAAATGGAGGCTCAGAGAGTCTAAAAATCTTGGT
GGGATCAAATGGCTGAGGAGTAGGTGTGTGGTCATGCGAACCAGATGGGA
CCACATCAGGGTTTTTTGCTTTGCGCCCCCCGCTGTACCCATGAGGAAGT
TTCTGGGACTAGTACACCCCACGCACAAATTGAAACTCAACAGAGCCCGA
GATCTGTGCACTGTTTTCAAAAGTTATGCAAATCATTTGAATCAATTAAA
TGGTAGTGGTGGTGGTGGTGCTTTTTTCTTCTCCCCATTCTCATCTCCCC
CTCTTTTCTTCACCTTCCTAAAATTTACCTTCTCCATTATTCATCTTCCT
TTTCCATATTTCACTTTACTTATGGACCACAGGAACATAATAAAATATAT
TTTCTTATAAAAACAACACTATTTTTATTATATAATAAACATCCAATATA
TTAATAACAACATTTTAAAATAATATTTCCTAAAATAGATTATCTTTTTA
TTG
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGGCTTTGCTACCTCCAAAAGGCATG
CCTTACCGTCAATGATAGACACTACCCTAGAATAGAAGAGTAGAGAAAAG
TATTTCAAGCAAATGGAAGTAGGGAGGAAGCATTGCTATGCTGATATTTG
ACAAAATAGATTTAAAACCCAAACTAATCAGAAACCATTTTGCTAAAATC
AGGAACGAGACCTGGGGGTCCACCCTGTCAACTCCTGTTCATCATAGCAC
TAAAAATCTTAGCTAGAGCTATAAGACAAGAGAGGAAAATAAATGTGATA
CAGATAGGAAAGGATTATATTACCACCCTCCGACAGACACTAAAGACTCA
GAAAATTCCTTGGACAGACCCCCACTTTCAGCAAAGTGACAGGACACAAA
ATTAACACACAAAACTAGTAGCCTCCCTATACATGAGTGATGAGCACACT
GGGGAAGAATTCATAGAACCAATTATGTTCACAGAAGCATTAAACATTCC
TAGGAGTAAATCTCATTAAGGAAGTGAAAGATCTCTACAGTGACAACTTT
AGAACTCTGGAAACAAAAAATCAAGGAAGGCACTAGAAGATTAAAAGCCT
GTTATCATGGATTGGGTAAATAAATATTGTGTCAATGATTCTCTTCGGGA
AAGCAATCTACAAATTCTGTGGCCCCTCCGTCAAAATCTTCACGCCTTCN

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_e22.b1 MSMg01no159_e22.b1 CHROMAT_FILE:
MSMg01no159_e22.b1 PHD_FILE: MSMg01no159_e22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:00 2005
         (320 letters)



>mm_chr7_37296596_37297315
          Length = 720

 Score =  596 bits (308), Expect = e-175
 Identities = 314/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcttgggattattacccagttgagaatgaaaacatggattgccagggatggattt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggaattcttgggattattacccagttgagaatgaaaacatggattgccagggatggattt 460

                                                                       
Query: 64  tacattgaccccgagtttataaaaacttctggtggcattcactcttggtgtatgtgtagt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tacattgaccccgagtttataaaaacttctggtggcattcactcttggtgtatgtgtagt 400

                                                                       
Query: 124 acattgctgcttgctgcatgctttcttccaattaggtggcatcatttaaccttccccata 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 acattgctgcttgctgcatgctttcttccaattaggtggcatcatttaaccttccccata 340

                                                                       
Query: 184 gcccagagtctgggtccaacaagtctcatttgattcgaaaggaaatggaggctcagagag 243
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 339 gcccagagtctgggtccaacaagtctcatttgatttgaaaggaaatggaggctcagagag 280

                                                                       
Query: 244 tctaaaaatcttggtgggatcaaatggctgaggagtaggtgtgtggtcatgcgaaccaga 303
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 tctaaaaatcttggcgggatcaaatggctgaggagtaggtgtgtggtcatgcgaaccaga 220

                           
Query: 304 tgggaccacatcaggg 319
           ||||||||||||||||
Sbjct: 219 tgggaccacatcaggg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)