BAC Information

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BAC

Clone NameMSMg01-159K19
Chromosome7 (Build37)
Map Location 148,942,813 - 149,102,186
singlet/doubletdoublet
Overlap geneMuc5ac, Muc5b, Tollip
Upstream geneCyp2e1, Syce1, LOC100043529, BC066028, 1190003J15Rik, Scgb1c1, Odf3, Bet1l, Ric8, Sirt3, Psmd13, LOC100043546, Cox8b, Nlrp6, Athl1, Ifitm5, Ifitm2, Ifitm1, LOC665143, Ifitm3, Ifitm6, B4galnt4, Pkp3, Sigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2
Downstream geneEG623757, Brsk2, 2700078K21Rik, Dusp8, LOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2, LOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159K19.T7 (MSMg01no159_k19.b1)MSMg01-159K19.TJ (MSMg01no159_k19.g1)
ACCAG359550AG359551
length755754
length of high quality
(start - end)
323 (44 - 366)291 (72 - 362)
definitionCHROMAT_FILE: MSMg01no159_k19.b1 PHD_FILE: MSMg01no159_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:26 2005CHROMAT_FILE: MSMg01no159_k19.g1 PHD_FILE: MSMg01no159_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,101,867 - 149,102,186)(148,942,813 - 148,942,995)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTAGGTAGACAAGGCTGAACTCTCTGAGATCCACCTGCTTCTGCCT
CCTACAGGCTGGGATTAAAGGTGTATGATACCACATCCAGACAGTTTTGG
TTCAAAACTTTTGTCTAGCCAGCTGTAGTACAGCATTTGGAAATCTGAGG
CAAGCAGAGGCCAACCTGAAATAGACCACAAGAAATAGACCACAAGAAAG
ACCTGGATAGCAAAACAAGACCTTATCTCAAAAAAACAATAGCTTTACAT
CTAGGTTTACAAGCCAAGCTGGCTTGCTGGCTTCATAGTGTGGATTAGAA
TGTGTTCTCTCTACTATATTCTGCCCACCCGCCGCTCTTTCTAAACTGTT
TCTAGAACTTACCAGGACCCCCATTTGAGCCTGAAGTTTCTCAGTGGAAA
CGTTTTATTTAGACTTCTTTAATAAGCAAGGGCTAACTGTTCAGGTTGTC
AATTTCCCCTCTGGGAAAACTTTAGTCATTTGCTTCTTTCATGGATTTGT
TTGAACCAGGCCTGGTGGCACAAACCTGTAATCACAGCACTCAGAAGGTG
CAGACAGGAGGTTCATGAGTTCAGGACCATCCTCAGCTATCTAGGGATTT
CGAGACCCTGTTCCAAAATAAAGCAGTGACAACAAAGGGCTACCTTCGCT
TTGCTACTTTTATTGCCATGAAAAGGCCTTGCTGACATCTCTTGTTAAGT
CGCAN
TGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCTAACCCTAACCCTAACCCTAACCCTAA
CCCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCCCTAACCCTAA
CCCTAACCCTAACCCTAACCCTAACCCTAGTGAATTCTAGGACAGCCAGG
GTTATAACCAAGAAACCTCATCTCAAAAAACCAAACGAAACCAAGAAAAC
CTTCTGGAGAGCCAGTGAGAGTATACTGGGCCAGAAGCAGGGGCTCCTGA
GACCACATGGTCTTTCTTCTCTGCTTGACAGAGTCTTGTCACTGGTCTTT
CTGCCCCTGTGTATTTTTTTCCTCCCCGCCCTGAGCTGTGTAGACTAATC
TAAAATCAATAGCCCCACCCCCGAAGCTGAGTAAAAGCTGCGTAGAGGGA
ATGGGCCCTGCAAACTTCACGGTGCTGGCAGACCCAGCATTTGCAGAAGG
AACGATGTCCAGTCAGACCTAGTCTGTGCAGGCTTCTGTCAGCCGCAGCA
GCAGCCTACCCTCTTTCAGAGCCCATGGGAGGGCCCAGGTTTTCCCTGTG
ACTTCAGACCCTTCCTCTACTTTGGCTCCTGTCCTCTTTGGGCTGAACTG
TATGTGCCGTGGGAAGGCATTGAACCTTTAAATTTCCACAGCCTGAAGGA
ATGTTTTGGGAAAAGCCTTTGTCCCCCTGGGCTTTAATTATTTTTAAAAA
TTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_k19.b1 MSMg01no159_k19.b1 CHROMAT_FILE:
MSMg01no159_k19.b1 PHD_FILE: MSMg01no159_k19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:26 2005
         (323 letters)



>mm_chr7_149101570_149102292
          Length = 723

 Score =  596 bits (308), Expect = e-175
 Identities = 317/320 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcactaggtagacaaggctgaactctctgagatccacctgcttctgcctcctaca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 ggaattcactaggtagacaaggctgaactctctgagatccacctgcttctgcctcctaca 558

                                                                       
Query: 64  ggctgggattaaaggtgtatgataccacatccagacagttttggttcaaaacttttgtct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 ggctgggattaaaggtgtatgataccacatccagacagttttggttcaaaacttttgtct 498

                                                                       
Query: 124 agccagctgtagtacagcatttggaaatctgaggcaagcagaggccaacctgaaatagac 183
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 agccagctgcagtacagcatttggaaatctgaggcaagcagaggccaacctgaaatagac 438

                                                                       
Query: 184 cacaagaaatagaccacaagaaagacctggatagcaaaacaagaccttatctcaaaaaaa 243
           |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 437 cacaagaaatagaccacaggaaagacctggaaagcaaaacaagaccttatctcaaaaaaa 378

                                                                       
Query: 244 caatagctttacatctaggtttacaagccaagctggcttgctggcttcatagtgtggatt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 caatagctttacatctaggtttacaagccaagctggcttgctggcttcatagtgtggatt 318

                               
Query: 304 agaatgtgttctctctacta 323
           ||||||||||||||||||||
Sbjct: 317 agaatgtgttctctctacta 298


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no159_k19.g1 MSMg01no159_k19.g1 CHROMAT_FILE:
MSMg01no159_k19.g1 PHD_FILE: MSMg01no159_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:26 2005
         (291 letters)



>mm_chr7_148942506_148943196
          Length = 691

 Score =  346 bits (179), Expect = e-100
 Identities = 182/183 (99%)
 Strand = Plus / Plus

                                                                       
Query: 108 agtgaattctaggacagccagggttataaccaagaaacctcatctcaaaaaaccaaacga 167
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 308 agtgaattctaggacagccagggttataaccaagaaacctcatctcaaaaaaccaaacta 367

                                                                       
Query: 168 aaccaagaaaaccttctggagagccagtgagagtatactgggccagaagcaggggctcct 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaccaagaaaaccttctggagagccagtgagagtatactgggccagaagcaggggctcct 427

                                                                       
Query: 228 gagaccacatggtctttcttctctgcttgacagagtcttgtcactggtctttctgcccct 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gagaccacatggtctttcttctctgcttgacagagtcttgtcactggtctttctgcccct 487

              
Query: 288 gtg 290
           |||
Sbjct: 488 gtg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)