Query= MSMg01no159_n01.b1 MSMg01no159_n01.b1 CHROMAT_FILE:
MSMg01no159_n01.b1 PHD_FILE: MSMg01no159_n01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:36 2005
(647 letters)
>mm_chr7_106739466_106740512
Length = 1047
Score = 1208 bits (625), Expect = 0.0
Identities = 640/645 (99%)
Strand = Plus / Minus
Query: 3 cggaattctcagggaccaccttgtccaggctcttgtctttagctaccccaagaaggaggg 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 cggaattctcagggaccaccttgtccaggctcttgtctttagctaccccaagaaggaggg 788
Query: 63 acatacccataccccagtcagctggctcagagtcacctgacttcaagaacttttcacctt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 acatacccataccccagtcagctggctcagagtcacctgacttcaagaacttttcacctt 728
Query: 123 ctagctcactgataagggtaatagcaaggagaccctgagtcctgttccccatcaccaccc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ctagctcactgataagggtaatagcaaggagaccctgagtcctgttccccatcaccaccc 668
Query: 183 tgctgattagctggggttctccctccagtctgaaacaggcaattataagagtgtaaggag 242
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 667 tgctgattagctggggttctccctccagtttgaaacaggcaattataagagtgtaaggag 608
Query: 243 gaatggccaggacccttccattgctcctgttccataggtgcacatgcccacctctgccag 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gaatggccaggacccttccattgctcctgttccataggtgcacatgcccacctctgccag 548
Query: 303 tcctttggacccctttaggattccccacaccctcaaggacagtccagagacactgggacc 362
||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 547 tcctttggaccccaacaggattccccaaaccctcaaggacagtccagagacactgggacc 488
Query: 363 tgagggatagtagagctgaggacagtggtgtctgggcctcttacctccttatccagtgat 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tgagggatagtagagctgaggacagtggtgtctgggcctcttacctccttatccagtgat 428
Query: 423 gcctcaaggtgtaggggcttgtctgacataaggaactgtctggtagtctcagccgtgggc 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gcctcaaggtgtaggggcttgtctgacataaggaactgtctggtagtctcagccgtgggc 368
Query: 483 tgagggccaggtctctcaggggcatactgaaccttccggatgactagccgcacagagttc 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tgagggccaggtctctcaggggcatactgaaccttccggatgactagccgcacagagttc 308
Query: 543 ctaaggaagatgcatggggagaaagacagagtcaccagcctccactctcttctctgtaat 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ctaaggaagatgcatggggagaaagacagagtcaccagcctccactctcttctctgtaat 248
Query: 603 acctagacccctctcctgttcaagagtctactgtagctccccatt 647
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 acctagacccctctcctgttcaagagtctactgtagctccccatt 203
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space: 660569
Effective search space used: 660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no159_n01.g1 MSMg01no159_n01.g1 CHROMAT_FILE:
MSMg01no159_n01.g1 PHD_FILE: MSMg01no159_n01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:36 2005
(576 letters)
>mm_chr7_106635066_106636041
Length = 976
Score = 926 bits (479), Expect = 0.0
Identities = 555/595 (93%), Gaps = 30/595 (5%)
Strand = Plus / Plus
Query: 1 caggacagccaaagttacatagtgagaccctgtctctctctcc--------------ctc 46
|||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 191 caggacag-caaagttacatagtgagaccctgtctctctctccctccctctctgtctctc 249
Query: 47 tcactc-ccc-cccccc---gtgttagagagagacagagacagagagatcaacagagaga 101
|| ||| ||| |||||| ||||| ||||||||||||||||||| ||||||||
Sbjct: 250 tccctctccctcccccctctgtgtt----agagacagagacagagagagcaacagag--- 302
Query: 102 cagagagagagacagagagagactttaacccaaatactcactccttattcttagcagcca 161
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 -agagagaaagacagagagagactttaacccaaatactcactccttattcttagcagcca 361
Query: 162 gtctcctttttagttagtcccttgtccccttcccaaatagatgatgatccaggcaagaac 221
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtctcctttttagttagtcccttgtccccttcccaaatagatgatgatccaggcaagaac 421
Query: 222 tgttcccaccctataaccctgcaccccttttcctccctacgagcttaataacctcccctc 281
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct: 422 tgttcccatcctataaccctgcaccccttttcttccctaccagcttaataacctcccctc 481
Query: 282 cacttattctctgccatccttttggtgatctcccctcattctggctctttgctcccagat 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 cacttattctctgccatccttttggtgatctcccctcattctggctctttgctcccagat 541
Query: 342 caacatggcactcccttctagtttgtgcctcttctagatgtttccgcagcatcctgtgtg 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 caacatggcactcccttctagtttgtgcctcttctagatgtttccgcagcatcctgtgtg 601
Query: 402 ccctcatcacacccctggagctttcatggggtggccagagcagaactaagtgtttgtctg 461
||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct: 602 cccccatcacacccctggagctttcatggggtggccagagcagagctaagt--ttgtctg 659
Query: 462 agggtttctattgctgtgatgaaacactgtgaccaaaggcaagttggggggaggaggttt 521
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 agggtttctattgccgtgatgaaacactgtgaccaaaggcaagttggggggaggaggttt 719
Query: 522 atttgcttacatttccaggactggaactcaacagggcaggaacctggagctgatg 576
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 720 atttgcttacatttccaggactggaactcaacagggcaggaacctagagctgatg 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 576
Length of database: 976
Length adjustment: 10
Effective length of query: 566
Effective length of database: 966
Effective search space: 546756
Effective search space used: 546756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
