BAC Information

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BAC

Clone NameMSMg01-159N22
Chromosome7 (Build37)
Map Location 16,246,431 - 16,246,718
singlet/doubletsinglet
Overlap genenone
Upstream geneEG194588, LOC666352, EG666312, LOC666365, LOC671978, LOC100042677, LOC100042685, EG666381, LOC100042691, LOC100042702, LOC100042707, LOC100042711, LOC100042714, LOC100042717, LOC100042721, LOC100042728, LOC100042731, LOC100042735, LOC100042739, LOC100042742, LOC235841, EG666407, LOC666337, Obox2, LOC100042753, LOC100042756, LOC100042758, EG545921, LOC100042762, Obox1, LOC100042765, Obox3
Downstream geneLOC100042771, Obox5, EG638338, Obox6, Crx, Crxos1, Sepw1, Gltscr2, Ehd2, Gltscr1, Zfp541, Napa, Kptn, Slc8a2, Mrg2, Dhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159N22.T7 (MSMg01no159_n22.b1)MSMg01-159N22.TJ (MSMg01no159_n22.g1)
ACCAG359693AG359694
length743743
length of high quality
(start - end)
315 (44 - 358)288 (73 - 360)
definitionCHROMAT_FILE: MSMg01no159_n22.b1 PHD_FILE: MSMg01no159_n22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:40 2005CHROMAT_FILE: MSMg01no159_n22.g1 PHD_FILE: MSMg01no159_n22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:40 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCAATTTTGGAGAGATATATAAGGGCAGGTCTTCTGAGTAGAATTAAA
ACAGCCAGAGTATTTAGCAAGTTACAGCAACCGTCTGGATTCCTGGTGAG
TTGGTGGGCTGAATGAAATATTTAAGGTTGCCGTGTGAAGGGGATATCAT
GGTGGAGCCTTGGTAACTTTTTGTAGTTTGTATGGGTTTTTGTTTGGTGA
AGTCTAAAAGTTGCCCTGTGCATAGGCAGAAGATATTTAAAATTAGTAGA
TTTTTCAAGTCTATCCCATACATATGAACACTAAGAACCACCAAAATGCC
TGGATTGTATTTTCTATTATTCCCCTCCCACCAGACCTCTAGGTGCTCTA
TTCTTCATTTTAGGCCCAGGCCTAAAAAAAGAATTTTATATAGAGCCTGA
GATCAGCCGATGTAGAGGCCTGCTTCTAGGACGAAGGGACTGTAGGCATT
CTCCAGTTCATTTTCCTTTACACATATATGCCGGACTAGAAAAAACTTCA
CTTGGGATATTGAGAGAGCTTGAGATCAATGGTAGCTCCCTATTGCCTAG
ATCAGGTATAGTGATGGGATCCTGGCTTCATACTTGACTACGTACCCTGT
ATATTGGTTGACATCTGCTTCATCGTTCAGACCTCGCTTCCTGTACGCGT
CATTATATGTGCTTTCCACCCGCGTTCTTATCATACATTCCCA
ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTGGAGAGGTTAGTCAGAATATGGGGT
TGGATATTTCTGTTGTTTTAGCTGTACCACTCCTGGACATATATCAAAGG
GGTGCTTATCCCTACTACAAGGTCACTTAATCAACAGTGTACATTGCTTC
TCTATTCGTAATAGCCAGTAATTAGAAATAGCCTAGGTGTCTGCTGGGGA
TAGCATACAAGGACATGGACTGCCTGTGGTAGGCCAGGATGGAGATATTT
CAGTAGATGTAAAAAATAAAAAAGTATTCCCTTTTCTCCTAACCTTAGGA
CCAGACAAGGTATTTTTACACCCCCCTCGCGCATAACTGCTTTTCAGTTG
GCCTTGGAGTCCATATCTATTCTATTATATCTGAATTTCTTATTTTTTAA
TTAGTTATTTTCTTTTATTTAATATTTTTTATTAAGTATTTTCCTCATTT
ATATTTCCAATGGTGTATTAGTCAGGGTTATCTAGAGTCAAAGAACTTAT
GGATAGTCTCTAGATAGTAAAGGAATTTATTGATGACTTACAGCCGGCAG
CCCAATTCCCAACAATTGTTCATGCGCAGCTGTGAATGGTAATCCAAGGA
TCCTATCAGTTACTTCGTCTCACGCATTAGTTAGGTGAATGACCCAGAAC
ATAATCTTTAGCTTGGCTCCCTTCTTCCAAGGCCTTATTTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_n22.g1 MSMg01no159_n22.g1 CHROMAT_FILE:
MSMg01no159_n22.g1 PHD_FILE: MSMg01no159_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:40 2005
         (288 letters)



>mm_chr7_16246231_16246920
          Length = 690

 Score =  344 bits (178), Expect = 3e-99
 Identities = 263/292 (90%), Gaps = 10/292 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtggagaggttagtcagaatatggggttggatatttctgttgttttagctgtaccactc 60
           ||||||| |||| ||||||||||||| |||||| ||||| ||| ||||||||||||||||
Sbjct: 201 agtggagtggtttgtcagaatatgggattggatctttctcttgatttagctgtaccactc 260

                                                                       
Query: 61  ctggacatatatcaaaggggtgcttatccctactacaaggtcacttaatcaacagtgtac 120
           |||| |||||||||||||||||||| |||| || |||||||||||| |||||||||||||
Sbjct: 261 ctgggcatatatcaaaggggtgcttttccccaccacaaggtcacttgatcaacagtgtac 320

                                                                       
Query: 121 attgcttctctattcgtaatagccagta-attagaaatagcctaggtgtctgctggggat 179
           |||||| |||||||| |||||||||| | |||||||||||||||||||||||||||||| 
Sbjct: 321 attgctgctctattcataatagccag-agattagaaatagcctaggtgtctgctggggac 379

                                                                       
Query: 180 agcatacaaggacat--ggactgcctgtggtaggccaggatggagatatttcagtag-at 236
           |||||||||| | ||  ||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 380 agcatacaag-a-atagggactgcctgtagtaggccaggatggagatatttcagtagcat 437

                                                               
Query: 237 gtaaaaaataaaaaa-gtattcccttttctcctaaccttagg-accagacaa 286
           |||||||| |||||| || ||||| ||||||||||| ||||| || ||||||
Sbjct: 438 gtaaaaaaaaaaaaaagtgttcccatttctcctaactttaggcac-agacaa 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 690
Length adjustment: 9
Effective length of query: 279
Effective length of database: 681
Effective search space:   189999
Effective search space used:   189999
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)