BAC Information

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BAC

Clone NameMSMg01-159P10
Chromosome7 (Build37)
Map Location 141,956,786 - 141,957,110
singlet/doubletsinglet
Overlap geneDock1
Upstream geneDhx32, Fank1, Adam12, A130023I24Rik, 4933400E14Rik, LOC100043248, LOC100043699, LOC668750
Downstream geneB830028B13Rik, EG668693, LOC100043254, Foxi2, Clrn3, Ptpre, Mki67
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-159P10.T7 (MSMg01no159_p10.b1)MSMg01-159P10.TJ (MSMg01no159_p10.g1)
ACCAG359758AG359759
length740737
length of high quality
(start - end)
315 (43 - 357)93 (231 - 323)
definitionCHROMAT_FILE: MSMg01no159_p10.b1 PHD_FILE: MSMg01no159_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:47 2005CHROMAT_FILE: MSMg01no159_p10.g1 PHD_FILE: MSMg01no159_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCTAGGGTGGGTCCTTGACAACCTTGAGCAACTTTGCTTTCTGTGATGT
GAGGGAGGATTTCACAAGCAGGCCCCAGGGAGGAAATGACCATAGAAATC
CAATACCTTAAGGGTCTCAAACCAGCGAGGCTGCTTCACTTGGTAATAAA
TCACCGATTTGTACTCGGAGATCGCCTCGTCGCCAGCACCGGGGAAAATC
ACGTGCTTTAGGAAAAGGCATAAAGAAAGAGTTCATGTTAGGCAAACTAA
GGGGGCTTAGTGGCTAAGTCTGACGACCAGAGTTCAGTCCCAGGACCTAC
ATGGTATAAATAGACACCTGACGNNCGCATGTGTAGGCATGTGCACACAC
ACACACACACACACACACACACAAAAAATATTTTTTAATAATTTAGTTTT
TCAAAGTGTTAACATGAGATATCACAGTGTCTTCCCTACATATTCCTGTT
GTACCCAGTAAAGGAGGAGCGGTAGTCATCAGGCTGCCAATAAACCACTG
CATTTGGGCCCCAGAACGAAGGCACGGGTCTGCCTGTGCTAGTGGTCAGT
CTACACAATAGCCTCAGACCCTGGAGGTACAGACAATCATGAAACATGGG
GCAAACCTTGACTGCCACTTCTCCTGTCCCCTCCCCAACTCAGTTCAAAT
GACAATCTGAGAACACTTGCCTGACTTACTCAGCAGGCCT
ATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTTAGTTAGCCGGTTGAGGCCACATTTAT
CGGGAATAAATAGACACTTTCCTTTTTTCTTCTTCTTTTTCTTTTCTTAA
TCCCTTCCCCCCTTTTTTTTAACATCTGATTAGGGAAAGTCAGGCAACAC
TCAGCTTTAAAGAAAGGGCTGAGGGGAACAAACCCACATTGGGCCCTTGG
GCCTCTCAGTTTGCTTCAGCGAAGGCCCAGCATCCTTCCCTGCCTTCCTC
GAACCTTTTTGAGGCTATAGGCACATTCCTGGCAGGGGGGCTGTCAATCC
TACCCTTAGTCCTTCCCCGGCGTCCCCAAATGACCAGCCATGGAAGGATA
TAGAACATTCAGGTTCCCCGAAGAAAGAAATTTGGGGACCAGGTTTCTCG
AAAAAAAGCCATTTTTCCTTCATTTTCAAACAGCTCGCAACAATCTTTCA
CTTCAGCTACAAAATATCGATGGCTCAGCATTTCAAGGTTGGGGGTTCAG
GGTGAGCAAAAGTAATCGACTTGAAAGGCTCTGGGTTTCTCCACATCCCC
TCCCCTAGATCCCCGTCTCCACGCTACCACATGCTCCAGGCCTGACACTT
CTGGAACAACTCTTTGTACCAAACTCAGCCAGCCTGACTCGCTGGAAGCC
CGGGGGAAAGCACCAGCTCCCACACCAAATATCACCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no159_p10.b1 MSMg01no159_p10.b1 CHROMAT_FILE:
MSMg01no159_p10.b1 PHD_FILE: MSMg01no159_p10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:47 2005
         (315 letters)



>mm_chr7_141956658_141957372
          Length = 715

 Score =  516 bits (267), Expect = e-151
 Identities = 303/325 (93%), Gaps = 16/325 (4%)
 Strand = Plus / Minus

                                                                       
Query: 6   aattcctagggtgggtccttgacaaccttgagcaactttgctttctgtgatgtgagggag 65
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 453 aattcctagggtgggtccttgacaaccttgagcaactttgctttctgtggtgtgagggag 394

                                                                       
Query: 66  gatttcacaagcaggccccagggaggaaatgaccatagaaatccaataccttaagggtct 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gatttcacaagcaggccccagggaggaaatgaccatagaaatccaataccttaagggtct 334

                                                                       
Query: 126 caaaccagcgaggctgcttcacttggtaataaatcaccgatttgtactcggagatcgcct 185
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 333 caaaccagcgaggctgcttcacttgataataaatcaccgatttgtactcggagatcgcct 274

                                                                       
Query: 186 cgtcgccagcaccggggaaaatcacgtgctttaggaaaaggcataaagaaagagttcatg 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cgtcgccagcaccggggaaaatcacgtgctttaggaaaaggcataaagaaagagttcatg 214

                                                                       
Query: 246 ttaggcaaactaagggggcttagtggctaa----------------gtctgacgaccaga 289
           |||||||| ||||||||||  |||||||||                ||||||||||||||
Sbjct: 213 ttaggcaagctaagggggcgcagtggctaaaggctctcggtgccaagtctgacgaccaga 154

                                    
Query: 290 gttcagtcccaggacctacatggta 314
           ||||||||||||||||| |||||||
Sbjct: 153 gttcagtcccaggacctgcatggta 129


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)