BAC Information

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BAC

Clone NameMSMg01-160A12
Chromosome7 (Build37)
Map Location 70,856,144 - 70,856,422
singlet/doubletsinglet
Overlap geneOtud7a
Upstream geneLOC384631, LOC622243, EG622251, Chrna7, LOC545971, LOC100041386
Downstream geneLOC665083, Klf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160A12.T7 (MSMg01no160_a12.b1)MSMg01-160A12.TJ (MSMg01no160_a12.g1)
ACCAG359808AG359809
length710782
length of high quality
(start - end)
287 (100 - 386)284 (128 - 411)
definitionCHROMAT_FILE: MSMg01no160_a12.b1 PHD_FILE: MSMg01no160_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:53 2005CHROMAT_FILE: MSMg01no160_a12.g1 PHD_FILE: MSMg01no160_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:25:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTCCTATTCCAAGAGGATCCGCGGAATTCTTTGTTTACCTCTGAGCCCC
ATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCACCTTCTTGACCTCT
TTATATATGTTGGATATTAGTCCCCTATCTGATTTAGGATAGGTAAAGAT
CCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACAGTGTCTTTTG
CCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTTGTCAATTCTTGAT
CTTACAGCACAAGCCATTGCTGTTCAGTTCAGGAATTTTTCCCCTGTGCC
CATATCTTCAAGGCTTTTCCCCACTTTCTTCTCTATAAGTTTCAGCGTCT
CTGGTTTTATGTGAAGTTCTTTGATCCATTTAGATCCCCCCCCACCACAA
GGAGATAAGTATGGATCGATTCGCATTCTTCTACATGATAACAACCAGTT
GCGCCAGCACCAATTGTTGAAAATGCTGTCTTTCTTCCACTGGATGCTTT
TATCTCCCTTGTCAAATATCAATGTGATCATTGCTTGTGTGGTTTCATTT
CTTGGTTCTTCAATTCTACTTCCACTGCTCTATTTGCTCTGTCCTCTATT
TCTCTTCTCATGCTTGTTTTTTTTCTCTTGCTTTTTTTTTCCCCCCTTTC
CACTCTCCTCTTGTTCTCTCCCTTATTATTTTCCCCCCTCCCCTTTTATC
CATTACTCTC
TTTTTTTTTATCCNNNCCCCCCCTCCCTCCCAATTTCTCTTCTNNTNTTT
TCAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTAAGGAGGAGGAGGGTGGTCA
GATGATCAATACAGCAGCAGTGAGGGATTCGAAACAAGACAGTAAAGGAT
GGAACATACAGGGGAGGGGGAGACAGGACGGAGTCTCTGGCCAGTCTTGA
ACAAATAAGCAGTATGTATGCATATCTATATCTATGCCCTTATTTGTCCA
TCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCAAT
TTGAAAAGTACTGGCTAGCAAAGAGGATAGTCTTCCAAGTGGTCTTTGAT
AAAACCAATCTTTTCTCACTCCCCCCCACCCCTAATATCCAGTAACTCTA
GAATGTTCTAGAATCCCGATATAAGAAAGGATGTGGTAAGACCAGCTCTG
GCTGTCACATTCTGTAACAAATGTCCTTCTGTTAGTCTTTGATACCTATA
GTATCATCTGGGATACAGCAGGTTCTCAATGAATGTTTACTAAGAGAATA
ACTGTAGTGGTCTTGAGAACCTCTATGATATATATCTAACCACCGAGCCA
TCTTCTCTGGCTCCCTCCCTGCTTCCTGACTGCGATTGCCCTATGACCTA
GCTTGTTCCCAGTTCCTGTTTCCATGATATTCTCCTTTTAATAGATCCTT
TTTCTTTCCTTAAGCTCACTTTGGATAGGACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_a12.g1 MSMg01no160_a12.g1 CHROMAT_FILE:
MSMg01no160_a12.g1 PHD_FILE: MSMg01no160_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:25:53 2005
         (284 letters)



>mm_chr7_70856054_70856737
          Length = 684

 Score =  505 bits (261), Expect = e-147
 Identities = 276/283 (97%), Gaps = 4/283 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaaggaggaggagggtggtcagatgatcaatacagcagcagtgagggattcgaaacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 cttaaggaggaggagggtggtcagatgatcaatacagcagcagtgagggattcgaaacaa 310

                                                                       
Query: 61  gacagtaaaggatggaacatacaggggagggggagacaggacggagtctctggccagtct 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gacagtgaaggatggaacatacaggggagggggagacaggacggagtctctggccagtct 250

                                                                       
Query: 121 tgaacaaataagcagtatgtatgcatatctatatctatgcccttatttgtccatccatcc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||    |||||||
Sbjct: 249 tgaacaaataagcagtatgtatgcatatctatatctatgcccttatttg----tccatcc 194

                                                                       
Query: 181 atccatccatccatccatccatccatccatccatccatccaatttgaaaagtactggcta 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 193 atccatccatccatccatccatccatccatccatccatccagtttgaaaagtactggcta 134

                                                      
Query: 241 gcaaagaggatagtcttccaagtggtctttgataaaaccaatc 283
           | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 133 gtaaagaggatagtcttccaagtggtctttgataaaaccaatc 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 9
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)