BAC Information

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BAC

Clone NameMSMg01-160E01
Chromosome7 (Build37)
Map Location 70,964,194 - 70,964,311
singlet/doubletsinglet
Overlap genenone
Upstream geneEG622251, Chrna7, Otud7a, LOC545971, LOC100041386, LOC665083
Downstream geneKlf13, E030018B13Rik, Trpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160E01.T7 (MSMg01no160_e01.b1)MSMg01-160E01.TJ (MSMg01no160_e01.g1)
ACCAG359973AG359974
length713742
length of high quality
(start - end)
117 (96 - 212)229 (129 - 357)
definitionCHROMAT_FILE: MSMg01no160_e01.b1 PHD_FILE: MSMg01no160_e01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:09 2005CHROMAT_FILE: MSMg01no160_e01.g1 PHD_FILE: MSMg01no160_e01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:09 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTACCTTGCACCCGCCGCGGAANCAGCGTATTGCTGCAGGAAGANGNN
GAGGCCNAGCAGGAGAGAGAGGCAGAAAGCTTTACTTCTACTCAGCCTTT
GTGGTTTCCCTCCCAGACCAGACATCTCAGTATCAGCATGAACTTGTTTT
GAGCTGACTCAGCTCCCAAGTCTTCTCACAGATCATGAAAGACATACTGG
ATAGGAGCAGATGTTTTTTAGCAACTTAACTGAACTTAGAAAAATGCTCC
AGAATCTTCATAAGAACTCAGAACAGCATTTAGGTGTTTTGGCNCAGCAG
GNAAGAGCACGGACGGCTCTTCAAACGCCCCGCACCCAAANCCCAGCAAC
CACATGGTGGCTTACAACCACCCATAAAGAGATCTGATACCTTCTTCTGG
TGTGTAGCTGAAGACAGCTACAGTGTACTTTATTATGTATTTTTTATCAT
ACATAATAAATAAATAAATCTTTGGGCCAGAGCGAGCAGGGACTGAGCGA
GCAGAATTGCTCAGAGTGAGCAGGGCCGACCTGAGTGAGCCGGGGCCCCA
AAATTCATGTCCCAACAACCACATGAAGGCTCCCCAGTATCTGGACAGTA
ACAGGGGGACTCCCTACTTATTTTTTTTTTTTATACATCTTTGACACGGA
AAAAACAGAACTCTGCTACAGGGACAGCCTATTGCACCCAGTGCGTGAAA
TCGCAGGGGCACT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTTCCCGAAAATCTTGGGGCTGGGAAGTATACAGAGAAAGAAA
GCATACTTAGCCTTTTGTCCTGGATGGGATAAGAATGGCCCCCACAAGCA
GAGACTGAAGAAAAGGCCATCCAGAGACTCTCCACCTGGGGATCCATCCC
ATATACAGGCACCAAACCCAGACACTATTGTGGATGCCAGGAAGTGCTTG
CTGACAGGAGCCTGATATGGCTGTCTCCTGATAGGCTTTGCCAGAACCTG
ACAAATATAGAGGCAGGTGCTTGCAGTTAACCATTGGACTGAGTTGGGGG
TCCCCAATGGATTAGTTAGATAAAGGACTGAAGGAGCTGAAGGGGCTTGC
AACCCCATACCACCAACAACAATATCAACCAACCAACCCCACCCCCCACC
CCGAGCTCCCAGGGACTAAACCACCAACCAAAGAGTATACATGGAGGAAC
TCATGGCTCCAGCCATACATGTAGCAGAGGATGGCCTTGTCTGGCCTCAG
TGAGAGGAGAGGCCCTTAGTCCTGTGAAGGCTCAGTGCGCCAGTGCAGGG
AAATGTCAGGGTGGGGAGGTAGGTGGGCGTGCTGGGGATTGACCTTTATT
TTTTTTCTTCCTTTTCCTTATAGCTCCCATCCTCTCTCAATTTTGTAACC
GTCGGACTTCCTTCTTTCATTTTCTTTTTGCTGCACCTTCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_e01.b1 MSMg01no160_e01.b1 CHROMAT_FILE:
MSMg01no160_e01.b1 PHD_FILE: MSMg01no160_e01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:09 2005
         (117 letters)



>mm_chr7_70963994_70964512
          Length = 519

 Score =  190 bits (98), Expect = 3e-53
 Identities = 113/118 (95%), Gaps = 2/118 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cctttgtggttt-ccctcccagaccagacatctcagtatcagcatgaacttgttttgagc 59
           |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 201 cctttgtggttttccctcccagaccagacatctcagtatcagcgtgaacttgttttgagc 260

                                                                     
Query: 60  tga-ctcagctcccaagtcttctcacagatcatgaaagacatactggataggagcaga 116
           ||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgagctctgctcccaagtctcctcacagatcatgaaagacatactggataggagcaga 318


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 117
Length of database: 519
Length adjustment: 8
Effective length of query: 109
Effective length of database: 511
Effective search space:    55699
Effective search space used:    55699
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)