BAC Information

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BAC

Clone NameMSMg01-161D04
Chromosome7 (Build37)
Map Location 62,890,964 - 62,891,369
singlet/doubletsinglet
Overlap genenone
Upstream geneLuzp2, LOC668796
Downstream geneSiglech, Tubgcp5, Cyfip1, Nipa2, Nipa1, LOC672959, Herc2, p
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161D04.T7 (MSMg01no161_d04.b1)MSMg01-161D04.TJ (MSMg01no161_d04.g1)
ACCAG360663AG360664
length1,2271,247
length of high quality
(start - end)
411 (45 - 455)325 (500 - 824)
definitionCHROMAT_FILE: MSMg01no161_d04.b1 PHD_FILE: MSMg01no161_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:32 2005CHROMAT_FILE: MSMg01no161_d04.g1 PHD_FILE: MSMg01no161_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:27:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCGGCACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTATTGAGGTTGAAGTTGATTGTATATGCTTCATTACATATCAGCA
CATAACTAATGGGATCAATTTTAATTGTATTTGTCTAGCTTTCCTTTAAA
ATCTTTCTTTTCTCTTTTTGCAGTAAAGGAAATTGAACCTGTCGTATGGC
ATCTTGGTTGAGTCTTCTGCCTCTGCACTGCATATCCATCCCTCCTTTTA
TGTGTCTTGAGATAGGGTGCTGAGTTGGCCAGACTAGCCTTGCAATCAGT
CTGCAGCTCAAGTTGGCCTTCCTGCCTTAATTACCTGAGTAGTTGCAATC
TACCTACAGGCCTCATCCACAAGACCCACCTTAAAACTTCTTAATGATCC
TCCTAGTGTAGACACACTAAGTATAATCAGTTATGACAGCTATATAAGTT
TTCTTTTTTTCCCCCCCGACGAGAAAGGTTCAGCACAGAATAAAAGACAA
ATCACAGTTATGGAAAGTCTCAGTGAACCTTTCAAGATACTAAAATGGTT
TATTAATATTCCCATGTCTGTGAAGTGTCAGACACTGTCCTACGAGCTCA
GAGCATAAAAATTAATAAAGTTCTACATTTATAGAGCTTAAATTCACATG
AGGAAGGTGGACTTCAAAGGGAGTCAGCAAGTGAATAACTACTGTACCCT
TACAATTTATGATTACTGGGCTGACAGGAGGAGCAGAGAGGTGTGGGTGA
GTGAAGCATGCAGACTTTAGATGCTTACAAAATGTTACCCAGAGGGGCAA
TATTTGAACATTGCCCATGGGATGTAAATGATAACACTCTGAGAGTCCTA
TGTTCAGGTTTTCTGATTGAGACACTTGCTGGAAAAGGACTTAGCATCTA
TAAGAATTGTAAGATCAATGGGACAGAGTGAACAAAGGGAGAAGTGGCAG
AAACTGAAGTCCAAANAAAGGGCTGACTGCTTTCTATTATAGGGACTGAG
AAAATTCCTGCCAAAAAAACAAATGGTTGGATAATGGAATTTTTCTTTTT
CCCCAAACAAAAGAAATTTTTTTCCTTAAAACAAAACCGGAAAATGGGAT
TATTTTTTTTTAGGGAAACTTTTTTTAAAAAGTCAACCCAATATACTTTT
AAGCTCCTCTTAAAAAAAAAAAAGGAGTGGGCTCCTTATAAATAAAAGAG
TGGTGTGTTTCTCCTCCTCCCCAATAT
NNNTTCAGATGGTGAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACATGAAACTGTGAATGAAATTCACGAGCC
AGTTCTACAGGTGTTTGAATCAAAAAGGCCCAAGCAGCTCTAGCAGCTTT
ATCAACCAAATCATTGCCCTCTGCTAAAGGGCCAGGCAAACCTGTATGAG
CTCGAATGTGTTGGACAAAAAATGGAGAACCTCTATTTAAAGTTAAGGAT
TGCAATTTATTTAACAAATTCCCTATCGTGGATCGAAAATTCACCTTCCC
CATCACTTCCAGCACTGCTAACAAATTAACCACATACTGACTATCTGAAA
TTAAATTAAAAGATTCAGAATACAATTCAAAAACTTTTATAACAATCTGC
AACTCAATAACTTGGGGAGAAGCAGGGGGAAACTGTAAAGTTACTGGCGT
GTTTTTTTGCCCCCCCCCTGCTCCACAGCCTGTCTTAAACAAAAAAGAAA
ATTTAAAGGGGCATCAGGCAATGGCACTCGAGAAGTAATTCGTGGAAAAA
CAACTGGATGAGCTTTAATCAGCTGCAAAATGGGATCCTTAGGGAAATGA
TTATCCATCTTCCCCATAAAGCTACATCTCAAAATTGCCCAATCATCAAC
AGTAGCTGATAATACTTCTATTTGCTTCATATTATATGGAACAATCAATT
CCTGAGGGGGATTGCCAAAATATTGAATACATTGTTGTAGGCCAATCAAG
GCCAATTGTGCTACCGAGGCAGGGTAATAAGACAAGATTTTTGCAGGTGA
AATCTTGGGATGAATCCATAGCAAAGAGATGCCCTGCCAGAGGACTCCAG
TAGGCTGGGTCTCTGAGGGCAGGATGCACAAAATAATAGGACTGAACAGA
TCTCTTCCCTTTAATGCTGCTGTTTTGAAAACCCTTTTCACCCAAACTTA
ATGGTACCCGGGGCAAAAAACCTAAACTTGCCCCGGAAAAATTTATCCCT
AAATCTCCCCGGAAAAAAAAAAAATAAGGGGTGGAAATGGGTTGGTTGGG
TAGGCCCCCAAAAGGAACGGAAATACCCCCCGTTTATTCCCCCACCAGCT
TTGTAAAATCAATCAAGTGCCCCCCAATATTTCTCCTGAATACGAAATTT
CTATGGAGAAAACTCGACCAATCAAAAATTTTGTTTCTCCAAAAAACACC
ACCTTTCTTCTTGAAACATTTCCGGGGGAGAACCACACTGTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_d04.b1 MSMg01no161_d04.b1 CHROMAT_FILE:
MSMg01no161_d04.b1 PHD_FILE: MSMg01no161_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:32 2005
         (411 letters)



>mm_chr7_62890962_62891772
          Length = 811

 Score =  739 bits (382), Expect = 0.0
 Identities = 400/406 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctattgaggttgaagttgattgtatatgcttcattacatatcagcacataacta 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 408 gaattcctattgaggttgaagttgattgtatatgcttcattacatatcagcacatagcta 349

                                                                       
Query: 65  atgggatcaattttaattgtatttgtctagctttcctttaaaatctttcttttctctttt 124
           |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||
Sbjct: 348 atgggatcaattttaattgtatttgtttagctttcctttaagacctttcttttctctttt 289

                                                                       
Query: 125 tgcagtaaaggaaattgaacctgtcgtatggcatcttggttgagtcttctgcctctgcac 184
           ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 288 tgcagtaaaggaaattgaacccgtcatatggcatcttggttgagtcttctgcctctgcac 229

                                                                       
Query: 185 tgcatatccatccctccttttatgtgtcttgagatagggtgctgagttggccagactagc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 228 tgcatatccatccctccttttatgtgtcttgagatagggtgctgagttggccagactagc 169

                                                                       
Query: 245 cttgcaatcagtctgcagctcaagttggccttcctgccttaattacctgagtagttgcaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 168 cttgcaatcagtctgcagctcaagttggccttcctgccttaattacctgagtagttgcaa 109

                                                                       
Query: 305 tctacctacaggcctcatccacaagacccaccttaaaacttcttaatgatcctcctagtg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 108 tctacctacaggcctcatccacaagacccaccttaaaacttcttaatgatcctcctagtg 49

                                                         
Query: 365 tagacacactaagtataatcagttatgacagctatataagttttct 410
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 48  tagacacactaagtataatcagttatgacagctatataagttttct 3


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)