BAC Information

Click to search

BAC

Clone NameMSMg01-161H02
Chromosome7 (Build37)
Map Location 12,694,159 - 12,694,536
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042293, Zscan4d, LOC628737, LOC676750, LOC672893, LOC546931, LOC675762, Zscan4e, LOC665857, LOC665861, Zscan4f, LOC673742, LOC665887, LOC637541, LOC100042361, Zscan4-ps2, LOC675782, LOC100042386, LOC665926, LOC637571, LOC100043042, LOC628853, V1rg1, V1rg2, EG628898, V1rg5, V1rg6, LOC665999, V1rg4, LOC100042423, LOC628946, LOC100043075, LOC100042433
Downstream geneV1rg7, LOC100042437, V1rg3, LOC100042446, LOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161H02.T7 (MSMg01no161_h02.b1)MSMg01-161H02.TJ (MSMg01no161_h02.g1)
ACCAG360846AG360847
length1,2051,205
length of high quality
(start - end)
---416 (71 - 486)
definitionCHROMAT_FILE: MSMg01no161_h02.b1 PHD_FILE: MSMg01no161_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:03 2005CHROMAT_FILE: MSMg01no161_h02.g1 PHD_FILE: MSMg01no161_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATGGGCGTAACGATCACTATAGGGAGAGGACCGCGGAATTTCAGAAAA
NTNAANCCCATTAGGACCCCCNNGNNNNNNNNNNNGNGGNNNNNNNCCNT
AAAAAGGGNNNGNGNNNNNNNNNNNNGNNNNNNGNGNNNNNNNNGNNNNG
NNNNNNNNNNNGNNGNGNNTTCTCNAAAAAAGGCCCNNNNGNNNANNNGN
NAGNNNNNANANGAGAGGAGAAAAAAAAANNAAAAGAAANNGGGGGGGGG
GANGGAANNAAANGGGAANNNNAANNNAGNNNNAGGNNGGNANNNNNNAA
ANAGGGNNGGAGGNTTTTTTGTGAGGAGAANNNANNATAAGNAAGGAAGG
AGGGGANTGGGGNNAAAGGGGANAGGANNAANGGGTTTTTTTTTNGAGAN
NGGNANNNANNNNNANGAGGGGGAAAAAAGGACCCCTTTTTTTTCCCCCC
CCCNANAANNNNNGGNGNGAAAAAAAAAAAAGGGGGGNNNNNGNNNNNNN
NNNNNNNGNGNNNGNGNNNNGNGNNNNNGNNNNGNNGNNNNNGGNNGGNN
NNNNNNNNNNNNNNNGGNNNGNNGGNGGNNNNNNGGGGNNNNNNNGGNNN
GNNGNGNNGNNNNGNNGNNNNNNGGNNGGGNNNNNNNNNNGGGGNNNGNN
NNNNGGNGNNNNNNNNGNNGGNGNNGGNNNNNNGNGGGGGGGGNNNNNGN
GGGNNNNNGGNNNNNNNNNNNNNGGNNNGNNGNNNGNNNNGNNNGNNNGN
GTGTTTTTTTTGTNNNNGNNNNNGGGGNGNNNNGNNNNNNNGNNNGGGNG
GGGGGGGGGGGNGGGGGNNGGGNNNGGGGGGGGGGGGGTTTTTTGTTGTG
GGGGGGGGGGGGGNGGGGGGGGGGGGTGTTTTTTTTTTGGTGTGGGGGGN
NGGGGNGGGGGGNGGGGGGNGTTGGGGGGNGNGGGGNGGGTGNGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGGGGGGGGGGGGGGGGT
GGGGGGGGGTGGGGGGGTGGTGGGTGNGGTGGGNGGGGNGGGGTGTGGGG
GGTGGTGGGGGGGNGGGGGGTGGGGGGTGGTGGGGTGGGGGGGGGGTGGG
TGNGGGGGGGGGGGGGGGNGGGGGGNGGGGGGGGGGGTGNGGGGGGGNGG
GGGGNNGGGGGTGTGTGGTGGGGGGGTGGGTGGGGGGGTGGGGGNGGGGG
GTGGT
NNCCCTTCAAGTGTAGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCTTAGAGGGAATTATCAGGATTTTTCTA
GATATGCAGAGCTGGGGCTAAGTTGGGCTTTCATCTGTTATTCAGTCAGC
AGAAAAGGTATCTTTCTTTTATTTTATTTCCTTGCTTGTTTTCACTCCTC
TAGTTAGACACCATCTTTTCACATAGGCCAGGCTGATCTTGGTGTTCTTA
GGCTACCAAGCTGTGCTAGGATTACAGCCCTTCCTTCTAAGAGTACTAGG
TAGAAAGTCATGGGATGCCCCACAGAAGTTCCAATTCAATCACATTCTGA
AATTAATCTGTAACTGACTCACTGGAGCCAATTTTAGACATAACTTTATA
TGAAGCAGAACAGAGACCCAAACACACACCACATCACAGGGCTTCTTGTT
TTTTTTCCCCCCCCCCAGAAAGAGGTAAGATGTCTAAACAAAAAAAATCT
TGTAGAACTATTTCTGCAAGGGAATCTAACTGTTGTTTTAATTCAGAAAT
GGAATGTTTAATTTTTCCAGATCATGATCGATCAACCTGTCTATATAGTT
TGAAACGGATCAGAAGAGGCAAATTTAGTCAAACCACTTATATATACCTA
TGAAGCAGTCTCAGGGGCTCAGTAATATTGCTGTTATCCAGATGAATTAA
GGTAGAATAGCCTGCATCAGCATATGGGCACGTTATTAAGATTGGAAGAT
TACAGGTTTTGAATATGGCACAGGTTTAAGTGCCTTGCCAGTCCTGTAAT
GCTAATTTAGGCTGACATAGTGAGTTTTGTTAATCAATGGGCTGACAGGC
TTATTAGCTTCTTTCTCTTCGTAGAATGGGGCCAGGGATTTAGCATAAAC
CGCCATCCTGGAAGCCTTTTGAAAGATTTTTTTGGAAGAAAGGATTAATT
CTATCTCCAAGGGCCTTTTTTGGGGCATGGGTTAAAAATTTCCCGCTTTT
GGTTTGGTTTGGTTCCGGCCCCCCAAGGGCGAAACTTTTTTTAAGAAATT
TTTTGAAACCCTCCGGCCAAAACCCCATTTTTTTTTGGGAAAATATTTGC
ACTCTCACATAAGGAAACCTCGTCCCATTCTGGTCAAAATAATAACTTTT
TTTTTGTTCCCAAAAAAGTATTCTTATTTTTTCTCCCCCTATACCCCACT
TTGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_h02.g1 MSMg01no161_h02.g1 CHROMAT_FILE:
MSMg01no161_h02.g1 PHD_FILE: MSMg01no161_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:03 2005
         (416 letters)



>mm_chr7_12693959_12694774
          Length = 816

 Score =  708 bits (366), Expect = 0.0
 Identities = 375/378 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttagagggaattatcaggatttttctagatatgcagagctggggctaagttgggctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 578 ttcttagagggaattatcaggatttttctagatatgcagagctggggctaagttgggttt 519

                                                                       
Query: 61  tcatctgttattcagtcagcagaaaaggtatctttcttttattttatttccttgcttgtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 tcatctgttattcagtcagcagaaaaggtatctttcttttattttatttccttgcttgtt 459

                                                                       
Query: 121 ttcactcctctagttagacaccatcttttcacataggccaggctgatcttggtgttctta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ttcactcctctagttagacaccatcttttcacataggccaggctgatcttggtgttctta 399

                                                                       
Query: 181 ggctaccaagctgtgctaggattacagcccttccttctaagagtactaggtagaaagtca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ggctaccaagctgtgctaggattacagcccttccttctaagagtactaggtagaaagtca 339

                                                                       
Query: 241 tgggatgccccacagaagttccaattcaatcacattctgaaattaatctgtaactgactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgggatgccccacagaagttccaattcaatcacattctgaaattaatctgtaactgactc 279

                                                                       
Query: 301 actggagccaattttagacataactttatatgaagcagaacagagacccaaacacacacc 360
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 278 actggagccaattttagacataactttagatgaagcagaacagagacccaaacacacacc 219

                             
Query: 361 acatcacagggcttcttg 378
           ||||||||| ||||||||
Sbjct: 218 acatcacagtgcttcttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)