BAC Information

Click to search

BAC

Clone NameMSMg01-161M16
Chromosome7 (Build37)
Map Location 87,184,861 - 87,185,243
singlet/doubletsinglet
Overlap geneZfp710
Upstream geneAcan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik
Downstream geneIdh2, Sema4b, Cib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161M16.T7 (MSMg01no161_m16.b1)MSMg01-161M16.TJ (MSMg01no161_m16.g1)
ACCAG361105AG361106
length1,1741,225
length of high quality
(start - end)
---379 (71 - 449)
definitionCHROMAT_FILE: MSMg01no161_m16.b1 PHD_FILE: MSMg01no161_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:48 2005CHROMAT_FILE: MSMg01no161_m16.g1 PHD_FILE: MSMg01no161_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGGCATCAAAAACCCCNNGNNNANNGAGNNNNNNGGNNNGNNNCTTTTA
AAAGACGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNTTCTTAAAAGGAGAAAANNNNAGGANNNANNAAN
NGNNGNAGAAGAGGGAANNANNAAGAGANAANAANNANNNNAGANNAAGN
AAAAGGGAAGGGGGNAGAAGGGNGGGGAAGAANAAAANANAGGGGGGGGA
AANGANNNAGAATTTTTGNAGNGANNNNGAGGAGGANAGGAGNANNNNNN
NAGANNNNNAAAGGGAAAANNNAGAGANNNGATATTTTTTTTTTAAAANN
NANGNNANGAAAAAGANGNAAAGAGAAAAGGCCCCCTTTTTTTTCCCCCC
CCCCNGGANNANNNGNGNGNAAAAAAAAAAAAGAGGNGNNGGNNGNNGNG
NGNNNNNNNNNNNNNNNNNGNNNNNNGNNNGGNNNNGGNGGNNNGGAGGG
NGAGGGGNGNNNNGGANNNGNNNNNGGNNGGGNNNNNNNGANNAGGGGNN
NAGGANNAGGNAAANAAAGAAANANAAAGAGGGGGGAAGGNAGGAAGAGA
GGAAGGAAGGAAAGGAAGGAGAGGAAGAAAGAAGGAGAGGAAGAGAGANA
AGGGAANAAAAAAAAAAAAGAAAGGAAAAGGGAAGCAGNAAGGGAAAAGA
AAGAAAAGAATTTTTTTTTTTTTTAGGAAGAAAAGGAGAGGGAGAGAAAA
AGGAATGTGAAAAAGATAATTAAAGTAGAGAGAAATGAGTTTTTTTTTTT
TTTTTTGTTTTATGGATATTAAAAAAGNAATTGGGGTGGTGTTGTTTTTT
TTAGTAGAAGGAATTTTGGGAAGAATGGTAAAAATGGGAAATGGAAAAAA
TTTGTGTTGTAAGATTGGGTTAGTAAATAGGTATATGAAAATAAGTGGTT
TTGATGGAGGAGANAGATTTGTTTTATAAAAATAGATTAGGGTGTAGAAA
AATGGTTTATTAGGGGGAGTTGTAATAATTTTGGATGGGTTGTGAATTTT
TAAGTAGANAATANGTGGTTTTATGTTTTTGGGAAAATTGTGTGTTTGTT
GTTTAGTGGGTTTTAGAAAGATTAATTGGTGTGTATGTATTGTTGGAATA
TTTGGTGTTTGATAGATGTAGTAT
NNNGGGTCATGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGTGTGCAGTGTAGGCTGGTCTCACACTCA
GCAATCCCTTCCTCAGATTCCTAAGTTCTAGGACTACTGGAAGGAGTAAA
CCACCTCCCCAGCTCTCTTCACGCAAGGATGCTTTGTCTCATGTATATAC
ATACATGTGTACATACATGTAGTGCCCACAGAGGTTAGAAGATTGTGTAT
AGATCCCCTACAACTGTGAGTTACAGATGGTTGTGAACCACAGTATTGTT
GCTGGGAATCCATGTCCAGGAAGAGTAGCCAGTGCTCTTAATCACTGGGA
TATCTCTCCTGCCCAATTCTTTCTTTCCTCCTCTTCCTCCCCTCCCCTCT
TTTGCTTTTCCTTTTCTTTTTTTTTTATTATTTATTTACATTGCAAATGT
TTTTTTTTTTTCCCCCCCCCCCCCNTNTGNAAACCCCCTAAAAAAAAAAA
GGGGGCCCCACCCCTGCCTTGGTTTTTTCAAGACAAGGTTTCTCTCAGTA
GCCCTGGCTGTCCTAAAACTTACTCTGTAGACCAGGCCTCAAATTCAGAA
ATCTGCCTGCTTCTTTATGCCGTGCTTAAAGGAGTATGCCATCATGCCCC
TCTCTTTTTAAAACTGACATTTCCTTGCTAAGGAGCCTGTGTTCATCCAT
CTACCATTTGAATGTGTGTATACTTCTTTTCCTGCCTCTCCAGCCGTCCT
GTGCCTTGTGTTTATACCTCAGTCAATTTTTGTTAAATGCTATCTCATGG
CTTGTTCTTTTGCTTCTAATCATTGCATGATATTATAGAAGTTTTCTTCT
TTCCCGTTTTTTGAATTGGCCATCTTTCTATTAATTGTCTGAACTTTATT
TTTTTGTTCAGAATATTTTGGATTATTTACTGATTTTTATTAGTCCTATG
AAAATATGATCCCTTTGTTCTTACATTAATATATATTTCTCCCTCTTTTT
TTTAACATTTTATTTTTTTATAATTGTTTTTAATCTTTTCTCATTATACA
TTCTTTCTTTTCTTAAAAAATTTTCTTTTCCTATTTTTTATTAAATTAAT
ATGTATTTTTTTTATTTTATCTTTAGTTTCTTATTTCATTTTTTTCATAT
TTTCATCTTTTTTTTCTTTTTACATTTCTCTCTCGTTAACTTTATTCGTN
ATTCATGATTTCTATTTTCTTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_m16.g1 MSMg01no161_m16.g1 CHROMAT_FILE:
MSMg01no161_m16.g1 PHD_FILE: MSMg01no161_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:48 2005
         (379 letters)



>mm_chr7_87184661_87185439
          Length = 779

 Score =  681 bits (352), Expect = 0.0
 Identities = 374/384 (97%), Gaps = 6/384 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgtgcagtgtaggctggtctcacactcagcaatcccttcctcagattcctaagttcta 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 201 agtgcgcagtgtaggctggtctcacactcagcaatcccttcctcagattcctacgttcta 260

                                                                       
Query: 61  ggactactggaaggagtaaaccacctccccagctctcttcacgcaaggatgctttgtctc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggactactggaaggagtaaaccacctccccagctctcttcacgcaaggatgctttgtctc 320

                                                                       
Query: 121 atgtatatacatacatgtgtacatacatgtagtgcccacagaggttagaagattgtgtat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtatatacatacatgtgtacatacatgtagtgcccacagaggttagaagattgtgtat 380

                                                                       
Query: 181 agatcccctacaactgtgagttacagatggttgtgaaccacagtattgttgctgggaatc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatcccctacaactgtgagttacagatggttgtgaaccacagtattgttgctgggaatc 440

                                                                       
Query: 241 catgtccaggaagagtagccagtgctcttaatcactgggatatctctcctgcccaattct 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 catgtccaggaagagtagccagtgctcttaatcactgggacatctctcctgcccaattct 500

                                                                       
Query: 301 ttctttcctcctcttcctcccctcccctc-----ttttgcttttccttttcttttttttt 355
           |||||||||||||||||||||||||||||     |||||||||| |||||||||||||||
Sbjct: 501 ttctttcctcctcttcctcccctcccctcccctcttttgctttttcttttcttttttttt 560

                                   
Query: 356 tattatttatttacattgcaaatg 379
            |||||||||||||||||||||||
Sbjct: 561 -attatttatttacattgcaaatg 583


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 779
Length adjustment: 9
Effective length of query: 370
Effective length of database: 770
Effective search space:   284900
Effective search space used:   284900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)