BAC Information

Click to search

BAC

Clone NameMSMg01-161M20
Chromosome7 (Build37)
Map Location 151,151,608 - 151,152,003
singlet/doubletsinglet
Overlap genenone
Upstream geneAscl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1, Cdkn1c, Slc22a18, Phlda2, Nap1l4, Cars, Tnfrsf26, Tnfrsf22, Tnfrsf23, Osbpl5, Mrgprg, Mrgpre, Nadsyn1, Dhcr7, Gm498
Downstream geneShank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161M20.T7 (MSMg01no161_m20.b1)MSMg01-161M20.TJ (MSMg01no161_m20.g1)
ACCAG361112AG361113
length1,2101,218
length of high quality
(start - end)
411 (44 - 454)381 (72 - 452)
definitionCHROMAT_FILE: MSMg01no161_m20.b1 PHD_FILE: MSMg01no161_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:49 2005CHROMAT_FILE: MSMg01no161_m20.g1 PHD_FILE: MSMg01no161_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:49 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGCATTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGTGTTCAGAATGGGGAAAGGCCGAGAAACAGATGGCATGGTCTTAG
AGTTGTCACAGTGAGACCAGAAAGCATCTTCAGGAGGACTAGACCTTCGT
GATGACCCCACTTTCAGATGGATAGTCCAGACAAAACATCTGCCCTCCCG
AAGTTCCTGCTGCCCTCCTGCATCAAGAAGATAGGGGCTGGGTTGACAAG
GGGACTGTTTGGGCAAAGGTGCTTGCTTCCAAGCCTGATAAAGTCTGAGT
TTGGTCCCTCGGACCCATATGGTGGAAGACACAAGCCAACTCTTGCTTCC
ACATGCTTATAAACCCACATACCCCTCCCTCAATACAAAATAAATAAATT
ATTTTTTTAAAAGATGGGACTATTAAACCCGTGCTCCTGAAGCTCCAGCT
ATGATGTTTTCCCCCCCCCCCCCTCCCAGGTGTAACAAGCATCCTAACTT
GGTACGGCCATTGCCATCAGGACGAGCCTTGGGGCAGCAGCTGGATCTTC
TAAGCCTCAGGTTCTTTGTTTTGAAAAATGAGTCTTTCTGAACAATCCTG
GGACTCTAGAGTGATCCAAAAAGGTGATATGTGTAAAACATACTTACCAG
ACATTCCAATAGGTGGGTCTTGCTTAACTATTAACATTATTATTAAGGCC
AAGCATGATAGTACATGCCCGTAATCCCAGCTCCAGGAAGGCAGAGGTAC
CACATCACTTCAAGTTCCAGGCTAGCCTGGGTTACTTAGTGAGATCCTGC
CTCAGAAAAAAATAAAGTCATTGTCATAGGCTGTCATGATGCCTGAGTGG
CCAAAGAGCCTTGCTACTAAGCCTCACATCCTGAGTTCAAGTCCCAGGAC
CTACACGGTGGAAAGAGAGAATGGACTCCTACCAGTTGCTTCTTGACCTC
TATAATTATATGCGACATGCCTGTTGTCCCCCCCCTACTTTTCCAAATAA
TTTAATGTAAAGAAATTTTTAAAATCTTTATTAATTTTTTTTCTAGGTGG
AATTTTTTTTCTTATACTTTCGATCTTTTTCCTACAGAAAACTTTATTTG
GCACATTTTTTAAAAATACCTTATGGCGTCCTCTAATAAAAATAACTTTT
TGTTCTCTCTAAAAAACAACCGTGTTTGGGTTTCTCTCTCCCCACTGCTT
CTATATTTCT
NNGGGGTCAAGGTAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCCTCTGAAGAAACAGACTGGGAGGAAGA
AGCAGCTCATTATGAGGGAAAAGGGTACCAGCCAGATAAAGTGCTAGCTA
ATCATTAAGGAAAAAGCCAAAAGCGGCTGGCGAAGGCCAGTTTGCTGCTT
GGCCTCCGGGCAGTCGGCTTCAAGGTGCACTTCCGCCCTATGCGGAGCCC
CCGCCCTGCGTAGGGCGTCAGCCCTGCGCAAAGAGACAATGCGCAAAGAG
GCAATGCGCAAACTCATTCATTCCCAGAGAGGAACAAAGGAAAATACAAC
AGGCATTTCCGGTCTTTGAAGGAGCCGAGGGTGGGCGTGTCCACGCTCTG
GTATAATATGTGCAGATTAAAGAGCTTGCCGAGTCGGTCCGTAAATATGG
AATTTTTTTTCCCCCCCCCCCGGGGNAGTTAGACAGGCTAGAAAAAAGGG
GGGTAACTCCTGCCGACTGGCAAATGATTGCAAAAGCCGCTCTCCCTAGT
ATGGGCAAATATATGGAATGGAGAGCTCTATGGCAAGAGGCTGCACAAGC
GCAGGCCCGGTCAAACGCTGCTGCTTTGACTCCAGAGCAGAGAGATTGGA
CTTTTGACTTGTTAACGGGTCAGGGAGCTTATTCTGCTGATCAAACAAAC
TACCATTGGGGAGCTTATGCCCAAATTTCCTCCACGGCTATTAGGGCCTG
GAAGGCGCTCTCCCGAGCAGGTGAAGCCCCTGGACAACTAACAAAGATCG
TTCAGGGACCTCAAAAGTCCTTCTCAAATTTTGTGGCCAGAATGACAGAG
GCAGCAAAGCGTATTTTTGAAAATTCCAATGAAGCCGCACCTCTGGTAAA
ACAGCTCTTTTATGACCAAGCCCCCCCGGAATGCCGAGCGTCCATACCCC
TAAAAAAAAATAAGTTTCATGTTTTTGTCGGGAATTTGTGGTAACCTCTT
ACACATGGTGGGTTTTTGGTGTGCCATTCTTCTAATTCCCAAAAATTCTC
ATGTGTCCTAAAAGATATCTCCCCTTAAAATTTTGTCTGCTAAATTCATT
ATGGTATTTATTACTATAACCACTTTCTTGCAATGTTTACATAAAATCTT
CCTCTCCAGTTGTGGTGATTTCCTCTTCCTTTTTAATAAANTTATCTTTT
TTCTCTTCTTTATTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_m20.b1 MSMg01no161_m20.b1 CHROMAT_FILE:
MSMg01no161_m20.b1 PHD_FILE: MSMg01no161_m20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:49 2005
         (411 letters)



>mm_chr7_151151608_151152418
          Length = 811

 Score =  766 bits (396), Expect = 0.0
 Identities = 396/396 (100%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctgtgttcagaatggggaaaggccgagaaacagatggcatggtcttagagttgt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 ggaattctgtgttcagaatggggaaaggccgagaaacagatggcatggtcttagagttgt 337

                                                                       
Query: 64  cacagtgagaccagaaagcatcttcaggaggactagaccttcgtgatgaccccactttca 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 cacagtgagaccagaaagcatcttcaggaggactagaccttcgtgatgaccccactttca 277

                                                                       
Query: 124 gatggatagtccagacaaaacatctgccctcccgaagttcctgctgccctcctgcatcaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 gatggatagtccagacaaaacatctgccctcccgaagttcctgctgccctcctgcatcaa 217

                                                                       
Query: 184 gaagataggggctgggttgacaaggggactgtttgggcaaaggtgcttgcttccaagcct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 gaagataggggctgggttgacaaggggactgtttgggcaaaggtgcttgcttccaagcct 157

                                                                       
Query: 244 gataaagtctgagtttggtccctcggacccatatggtggaagacacaagccaactcttgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 gataaagtctgagtttggtccctcggacccatatggtggaagacacaagccaactcttgc 97

                                                                       
Query: 304 ttccacatgcttataaacccacatacccctccctcaatacaaaataaataaattattttt 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  ttccacatgcttataaacccacatacccctccctcaatacaaaataaataaattattttt 37

                                               
Query: 364 ttaaaagatgggactattaaacccgtgctcctgaag 399
           ||||||||||||||||||||||||||||||||||||
Sbjct: 36  ttaaaagatgggactattaaacccgtgctcctgaag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space:   322404
Effective search space used:   322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)