BAC Information

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BAC

Clone NameMSMg01-162M20
Chromosome7 (Build37)
Map Location 98,341,897 - 98,342,170
singlet/doubletsinglet
Overlap geneDlg2
Upstream genePicalm, Ccdc83, Sytl2, Ccdc89, Crebzf, Tmem126a, Tmem126b, B230218P12Rik, LOC666689, LOC621816, LOC100039943
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162M20.T7 (MSMg01no162_m20.b1)MSMg01-162M20.TJ (MSMg01no162_m20.g1)
ACCAG361814AG361815
length680678
length of high quality
(start - end)
304 (52 - 355)273 (77 - 349)
definitionCHROMAT_FILE: MSMg01no162_m20.b1 PHD_FILE: MSMg01no162_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:15 2005CHROMAT_FILE: MSMg01no162_m20.g1 PHD_FILE: MSMg01no162_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTAGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCCAGTATGCAACTCCAGACAGTTACCTGGCAACAAAGAGT
TAGGAGATAGCCCAGTCCACTATAAAGGGAGCTGCTTGGCCCCTCCTCAC
TCTCTTTAAGCTCTCACCTTTCTTACTCACCTTTCTTACTCTCATATCTA
GCTCTCCTCTCCCTCCCTTCTCCCTTCTCTCCATGTGACTGGCCTCTCTC
TACCTTCTCTCTTTCTCTTTGCCTTTCTACAATAACGTTCTAAAACCATA
GACTGTCTCTGCTCATCTATGACCGCCATGCTTGAATGATGGAATAGGCT
TTCCCTTTTTGTTCCACCCATAACTTNCCGCCAGAAGGCCTTCCTGCGCT
CCAGCCTTGGATCGGACCACACACAAGGACTCTGGCCTGCATGGGAACCA
CCCAGCACCCCCTCTCTCCCTGCCCTCTCTTCCCTTCTGCCCTGGGGATG
ACAGAGCCAGGGATTACTGAGACACCCCGGGACTCCATTTTGTTCTCAGC
TTTTCCAAGGTGTCCAGTGGTGAGACATCAGACTGCTCCTTGTTCACACC
CGCCCCCAGGCCTGAGATTCCATGGCTTCCCACATCCAGACACCCACCCA
GGGCCTCATAGCAAGCATGCAGTAGTCCTN
NACTCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGTCTGGCGGTTCCTCAGAAAAAA
CGTGGGTTTTGTTAGTGCTCTTCAATGTAACCTCTGTCTTGTAAAGGGGG
AAAACCAAACTTACCTAGGTGACCTTTTACATAGTGAGGTTTAACTTTCT
GGCAGATAAATTATCATAGAGACAGTAGGAAACCCTATGGGGCTTTCACC
TGGGAATCAAATGAGATTCATTATTTGAAAAGTTACTTAAGTGCTTTGGT
GGAGAAAGACCCACTCCCCAAAAATAGTTACAGCAGGACAGTTGTGGAAC
ATTGTTTGCTGCCCCCCACCTNACCACATCTAGTGCAGTAACAGGGTGTC
CTTGATGCAGCCAACCACTCTACCAAGCTGAACACAGGTGAAGGAAATGC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCCCCCTCCCTCCATCCTTGAATTCTCCCTGGTGCT
TATAAGGTCTAGACTAAATAGGCCACTCAAAAATGCAAAATCTATGCCAG
GTGTTGGCGTCACCCATTTTTAATCCCACCACTCTGATTGCAGAGACCGC
CATATTTATTGAACATCACTACTTGCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_m20.g1 MSMg01no162_m20.g1 CHROMAT_FILE:
MSMg01no162_m20.g1 PHD_FILE: MSMg01no162_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:15 2005
         (273 letters)



>mm_chr7_98341697_98342370
          Length = 674

 Score =  476 bits (246), Expect = e-139
 Identities = 267/274 (97%), Gaps = 1/274 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtctggcggttcctcagaaaa-aacgtgggttttgttagtgctcttcaatgtaacctct 59
           |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 201 agtctggcggttcctcagaaaataccgtgggttttgttagtgctcttcaatgtaacctct 260

                                                                       
Query: 60  gtcttgtaaagggggaaaaccaaacttacctaggtgaccttttacatagtgaggtttaac 119
           ||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtcctgtaaaaggggaaaaccaaacttacctaggtgaccttttacatagtgaggtttaac 320

                                                                       
Query: 120 tttctggcagataaattatcatagagacagtaggaaaccctatggggctttcacctggga 179
           ||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttctggtagataaattatcttagagacagtaggaaaccctatggggctttcacctggga 380

                                                                       
Query: 180 atcaaatgagattcattatttgaaaagttacttaagtgctttggtggagaaagacccact 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcaaatgagattcattatttgaaaagttacttaagtgctttggtggagaaagacccact 440

                                             
Query: 240 ccccaaaaatagttacagcaggacagttgtggaa 273
           ||||||||||| ||||||||||||||||||||||
Sbjct: 441 ccccaaaaataattacagcaggacagttgtggaa 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 674
Length adjustment: 9
Effective length of query: 264
Effective length of database: 665
Effective search space:   175560
Effective search space used:   175560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)