BAC Information

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BAC

Clone NameMSMg01-162O06
Chromosome7 (Build37)
Map Location 117,405,773 - 117,564,467
singlet/doubletdoublet
Overlap geneSwap70, EG668368, Sbf2
Upstream geneStk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1
Downstream geneLOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658, LOC384658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162O06.T7 (MSMg01no162_o06.b1)MSMg01-162O06.TJ (MSMg01no162_o06.g1)
ACCAG361871AG361872
length685683
length of high quality
(start - end)		308 (49 - 356)278 (77 - 354)
definitionCHROMAT_FILE: MSMg01no162_o06.b1 PHD_FILE: MSMg01no162_o06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:22 2005CHROMAT_FILE: MSMg01no162_o06.g1 PHD_FILE: MSMg01no162_o06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:22 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,405,773 - 117,406,074)(117,564,190 - 117,564,467)
sequence
GGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAGAAAGGGGTGGAAAAGCAGACAAGGATTAGAGAATGGAACC
CAGCACAATGAGTGCCGGGACACAGAAGGGGATATAGGGAATGCAGCACC
TGCTGTAGGGTTGGTTGAAGCGGTGTGAGGGAACCTGGGGTCTTGTTAAA
AATGAAGTTTGGCCTTCGGAGAGGGTGAGATGCCCAGTATGAGGCCTGAA
GCAAGCAGATGGAGAAGGATCACATTTGTGAACTGTCTGGAAAAACAGTA
CTTTCTTTCTCTTTCTCCCGTGAGTTTTTTGTTTATTCTCTCTCTCTCAT
CCTCTCTTATCCCTCTCCCCCCCCCCCTTTGAGACAAGAGTTTCACTCTG
TAGCCCTGGCTGACCCGAAATAACTGTGCTTTAGTCTCCTAAGTGCTGCC
ATTAAATATGCCATGGCATGCAGCTAAATATTTATTTTCCATTTCAACCT
TTTAGGAAGATAAGCATTTTATATCCTGATCCAGCACAAACAAATATGTG
TACACAAAAAACTTGTAAAACTGTATCTGGCTCTACTGTGATTGAACTAG
CATATTTTCATTCCATCACAAAAATCCTGGCTTACTTCATAGTGAGAACC
ACTGATCCCAGGAATGTCAACAGCAACTTTGTTCN

ACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTGTTCTCAGACCCTTCCTGCT
GCCTTGAGGGCCCTTAAAGGAAAAGCAGCAAGACAGTGTCTCACTGATGA
ACTGGGCTTGCACGTTCAGCAGAACCGGGCAATACTGGACCATCAACAGT
TTGACTACATAATAAGGATGATGAACTGTACTCTACAGGTAATCTTGAGT
GATTTTAGATTATTCCCATTTTGCAAATACCTTTTTTCCCCAAAAGATAT
ATTAATTACTGAACTATCAATGTCTTGAGGCTCCTATGGCTAAAAAAGAG
CTGAATTCCATGCCACCCACTTGCTCCTTAGCTGATGTAAATCCTCACTT
CTTTGTTCTTTCCTTGTTTTCTAGTGACAAGTACTTTGTTACTTTACTGA
TTTTATAATATGAGCAATATATTAAAGGCCCATAGTCGTATATTACCAAA
TTTTATACTTATGTCTGTTAATGTAGTTTTTGGCTATTTTATTGGGTTTT
AATGTTTTATTACACCCTAATCAAACCTTCAACACTAGGTAGGAGAGAAA
GAAGGTTAGAGGGAAAGGGAACATACATCTCTTTGGACTACTTCCTACTG
ATTAGGATGTTGAGTCCCTTGGGGCAAGATCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_o06.b1 MSMg01no162_o06.b1 CHROMAT_FILE:
MSMg01no162_o06.b1 PHD_FILE: MSMg01no162_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:22 2005
         (308 letters)



>mm_chr7_117405569_117406276
          Length = 708

 Score =  553 bits (286), Expect = e-162
 Identities = 298/302 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagaaaggggtggaaaagcagacaaggattagagaatggaacccagcacaatgag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 205 gaattcagaaaggggtggaaaagcagacaaggattagagaatggaacccagcacactgag 264

                                                                       
Query: 65  tgccgggacacagaaggggatatagggaatgcagcacctgctgtagggttggttgaagcg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgccgggacacagaaggggatatagggaatgcagcacctgctgtagggttggttgaagcg 324

                                                                       
Query: 125 gtgtgagggaacctggggtcttgttaaaaatgaagtttggccttcggagagggtgagatg 184
           |||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||
Sbjct: 325 gtgtgagggaacctggggtcttgttaaaaatgcagtgtggcctttggagagggtgagatg 384

                                                                       
Query: 185 cccagtatgaggcctgaagcaagcagatggagaaggatcacatttgtgaactgtctggaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cccagtatgaggcctgaagcaagcagatggagaaggatcacatttgtgaactgtctggaa 444

                                                                       
Query: 245 aaacagtactttctttctctttctcccgtgagttttttgtttattctctctctctcatcc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaacagtactttctttctctttctcccgtgagttttttgtttattctctctctctcatcc 504

             
Query: 305 tc 306
           ||
Sbjct: 505 tc 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 708
Length adjustment: 9
Effective length of query: 299
Effective length of database: 699
Effective search space:   209001
Effective search space used:   209001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no162_o06.g1 MSMg01no162_o06.g1 CHROMAT_FILE:
MSMg01no162_o06.g1 PHD_FILE: MSMg01no162_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:22 2005
         (278 letters)



>mm_chr7_117563990_117564667
          Length = 678

 Score =  530 bits (274), Expect = e-155
 Identities = 277/278 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttgttctcagacccttcctgctgccttgagggcccttaaaggaaaagcagcaagacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tcttgttctcagacccttcctgctgccttgagggcccttaaaggaaaagcagcaagacag 419

                                                                       
Query: 61  tgtctcactgatgaactgggcttgcacgttcagcagaaccgggcaatactggaccatcaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 tgtctcactgatgaactgggcttgcacgttcagcagaaccgggcaatactggaccatcaa 359

                                                                       
Query: 121 cagtttgactacataataaggatgatgaactgtactctacaggtaatcttgagtgatttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 cagtttgactacataataaggatgatgaactgtactctacaggtaatcttgagtgatttt 299

                                                                       
Query: 181 agattattcccattttgcaaataccttttttccccaaaagatatattaattactgaacta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 agattattcccattttgcaaataccttttttccccaaaagatatattaattactgaacta 239

                                                 
Query: 241 tcaatgtcttgaggctcctatggctaaaaaagagctga 278
           |||||||||||||||| |||||||||||||||||||||
Sbjct: 238 tcaatgtcttgaggctgctatggctaaaaaagagctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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