BAC Information

Click to search

BAC

Clone NameMSMg01-163J12
Chromosome7 (Build37)
Map Location 82,285,316 - 82,285,594
singlet/doubletsinglet
Overlap geneSv2b
Upstream geneLOC100042140, LOC546979, Slco3a1, EG665308, EG665641, 0610006L08Rik
Downstream gene1500012K07Rik, LOC100042171, Akap13, Klhl25, LOC100042210
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163J12.T7 (MSMg01no163_j12.b1)MSMg01-163J12.TJ (MSMg01no163_j12.g1)
ACCAG362347AG362348
length716722
length of high quality
(start - end)
313 (51 - 363)279 (82 - 360)
definitionCHROMAT_FILE: MSMg01no163_j12.b1 PHD_FILE: MSMg01no163_j12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:13 2005CHROMAT_FILE: MSMg01no163_j12.g1 PHD_FILE: MSMg01no163_j12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTGGTCCTACCACGTTCCCCATCATCCTGAAGCAGCTGG
TCTGATAGAAAGATGGAATGGCCTTTTGAAGACGCAGTTACAGCGCCAAT
TAGGTGGTAAAAGCTTGGAAGGCTGGGGTAGAGTTCTTCAGAAGGCAGTA
TATGCTTTGAATCAGCGCTCGATATATGGTACAGTTTCACCCATAGCCAG
GATTCATGGGTCCAGGAATCAAGGGGTGGAAAAGGGAATAGTTCCACTTA
CTATCACTCCTAGTGACCCTCTTGGAAAATTTTTGCTTCCTGTCCCCATA
TCTCTAGGTTCTGTTGGCTTACCCCCCTGGCTCCAGAGAGGGGAGTGCTC
CTACCAGGAGCTACAACCCACATTCCATTGAACTGGAAGCTCAGACTTCC
CCCTGGTCATTTTGGGCTTCTAATGCCCTTAAACCAACAGGCTAAAAAAG
GAATAACAGTGTTAGGAGGGGTGATAGATCCAGATTACCATGGGGAAATT
GGATTACCTCTTCACAATGGTGGTAAGCAAGATTATGTCTGGAGTGTAGG
AGATCCCTTAGGGCGTCTCTTAGTACTACCATGTCCTGTGATTAAAGTCA
ATGCGAAGCTACTACAGCCTAATCCAAGCAGGATGACAAAGGACGCATAC
CCATCAGGAATGAAGG
NAAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGAGGCATTCAATAACCTA
CAGTATTCAGTTCTGCACTCCCTACCCTACATTCAGGGCAACACTTCAAA
AATTTATTGACCACAAAGCAGGAACCCTTCAAGTCTCAGGAGAAGCTAGC
TGGCTACCTCAGTGCTCAACAGCCAGCTTGAAACACTCCTGCAGAAACGG
AATCAGTGTGTTCCTTCCCAAAGTCACTTAAAACCCTGGAGTCGTTTATT
TTTATCCTATCTTCCTTGCTATGAATTACTTAAAGAGAAGTTGCTGGAGA
GAAAGGTGTGTTTTTTTATAGCCGCTCCCCCCCCACTATCAAACCCCTGG
TGCTAAGAAAGAGCAGCAGGACAACACACTATGGTTTAAAACACTCTCAT
CTCTAGATACAGGGCAAGCTTGGAGGGGGCCTTGCCTAGAGCAGACACCT
TCCTGGGGGTTGCTCCCTCTCCATCATGCCACATTAGTTTAAGGATGCTG
TGTGGTCTTTATTCTTCACCCACTGAAATAATAGACTCCTGTGGAAACAG
CCTCCACTGCAAAAGTGTGCTCACAGATCATACCTGTTTGAAAACGGTCA
TGAACCTGACCAGCCAGCGCTGGTACCAAGTTCCGGTTGAGCTCTGTATC
TCAATGAATTCATCCATTTGCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_j12.g1 MSMg01no163_j12.g1 CHROMAT_FILE:
MSMg01no163_j12.g1 PHD_FILE: MSMg01no163_j12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:13 2005
         (279 letters)



>mm_chr7_82285116_82285794
          Length = 679

 Score =  462 bits (239), Expect = e-135
 Identities = 269/279 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   cgaggcattcaataacctacagtattcagttctgcactccctaccctacattcagggcaa 60
           ||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 201 cgaggcattcagtaacctacagtagtcagttctgcactccctaccctgcattcagggcaa 260

                                                                       
Query: 61  cacttcaaaaatttattgaccacaaagcaggaacccttcaagtctcaggagaagctagct 120
           |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 cacttcgaaaatttattgaccacaaagcatgaacccttcaagtctcaggagaagctagct 320

                                                                       
Query: 121 ggctacctcagtgctcaacagccagcttgaaacactcctgcagaaacggaatcagtgtgt 180
           || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 321 gggtacctcagtgctcaacagccagcttgaaacactcctgcagaaatggaatcagtgtgt 380

                                                                       
Query: 181 tccttcccaaagtcacttaaaaccctggagtcgtttatttttatcctatcttccttgcta 240
           |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 381 tccttcccaaagtcacttaaaaccctggagtcatttatatttatcctatcttccttgcta 440

                                                  
Query: 241 tgaattacttaaagagaagttgctggagagaaaggtgtg 279
           ||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 tgaattacttaaagagaagttgctgaagagaaaggtgtg 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)