BAC Information

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BAC

Clone NameMSMg01-163K19
Chromosome7 (Build37)
Map Location 118,497,649 - 118,497,805
singlet/doubletsinglet
Overlap genenone
Upstream geneSbf2, LOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658
Downstream geneLOC384658, Galntl4, LOC668399, LOC100042678, Usp47, Dkk3, Mical2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163K19.T7 (MSMg01no163_k19.b1)MSMg01-163K19.TJ (MSMg01no163_k19.g1)
ACCAG362403AG362404
length1,003750
length of high quality
(start - end)
---157 (77 - 233)
definitionCHROMAT_FILE: MSMg01no163_k19.b1 PHD_FILE: MSMg01no163_k19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:19 2005CHROMAT_FILE: MSMg01no163_k19.g1 PHD_FILE: MSMg01no163_k19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAAAAAAAAGCGCCCGNTAAAAAAAAAAANNATTTTGCAAAAAAAAGGG
GNGGNAANNNAAAAAANTTTTACAAAAAAAGAGGGGGGGNNNNNNNNAAA
AAGNNGNNGGGANGNANGGAGAAAAANNNAAAANAGTATTTTAACGCAGA
AAAAAAAGAGGGGGAAGGAAAAAAAAAANAGAAAAGAAGAAAAAAAAGAA
AAAAAAAAAANANNGGGGGAAAAAAAGGNAAAGGAAGNTAAGAGAGAAAA
AAAAAAGAAGAGAGAGAAAGAGAAAAGAGGAAGAGGANGAGGAAAGAAAA
NAGAAGAAGATAGGGAAAAAAAGAAATGAAAATATAGAGGAGATAATAAA
AAGGTATAAGTGAAAAAAATAAAAAAAAAAATAAAAAAAAAAAAAAAGAA
ATAAAAAAAAAAAAAGAAGAAAGAAAAAAATTATTTTTTGATAAAGAGAA
AAAAAAAAGAAAGGAGAAAGGAGAAAAAAGAAAAAATTATTTTTTTTTTA
TAAACACAGCACCACGAGCAGGAGAAGGAGAAAAAGAAAAGGAAAAAGGT
ATAGGGGGGGGGGGGTGCGGANCAATGGGTGGGTAAAAAAAAAATAAATA
AAATTGGGGGGGGGGGGGGGGGGGGGGTGATGAAAGGAAAAGAAAGGANG
ATGGAAAGAAGGTGAGGTAAGGGTAGGGAAATAAAGAAAATTAGGAAATG
AAAAGAAGATAAATAGGGGGAGGGGGGAGGAAGAAAAAAAAAAAAAAGAA
GAGGAAAAGATGAGGAAGAAAAATGTAAAGGAGAAGGGAAGAGGGGGGAA
TAGAACGAAGGAAGATTTGGAGAAAAAAAAGAGAGAAGGAAAAAGAGAGG
TAAAAGAAAAGGAGAGAAAAAAAAAGAAGAGGGAGGAGAAAGAAAAAGAG
GAGAAAGTGGAAGGGGAGAAGTGTGGAAAAAAAAAAAAGAAGGAAAAGGA
GAAATAGAGAAAAGGAAGAAAGAAAAAATAAGAGAGAAAAAGGACAGAAG
GAG
ACGATTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGAAAGCCATGGAATCACTAGCT
CTGGCTGCCAAGAAGCCATGATGCACCAACAGCCTGAGCTCAGAGACGGA
TAATTGCTTCTGGATGCTGGGCCACAGGAACTTAAAGCCCAGAGCTGTCG
ACATCCTACCCCACAGATACTCGCTCACCCTCGATCACTGCTGTTCTAGT
CACATTTGCTAGGAAACAAACAACCTAAATGACCCATGATACTTATACAC
TACAAAATACTAGTCAGCTGTTTTTTTTATGAAATCATGAACTTTGCAGG
TAAANTTTTTGATTACTCCCCCCCCCCCCCCCCCGTATGTTTGATTTTTG
ATTTGTATGCCCCCCCCCCCCCAANCTAATTGNAAAGNTCGTGNCTGCTC
GGCTCCAGATGCACATACATATCCTGCAGTAACTGAAAAAAGCAGGGAAG
CTTTAAAATCGACAACTGTAGGGTTACCCTGGTTGGGAAGCATATTTAGA
AAGAGTATTATATTTATTTATTTAAATTAAATAAATATTATTTTAAACAT
TTTCCATATTACTTCTTCGTACACTTCCACATAATTACCGACCTTACAGG
AAACCACTATAACACAATTTATTTTTTACCCGATTAATATTTTCACCCCC
ACCAGCCCTTTCTCATTATTTGCCAAATTTGCGTATTTATTCGGGAGACG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_k19.g1 MSMg01no163_k19.g1 CHROMAT_FILE:
MSMg01no163_k19.g1 PHD_FILE: MSMg01no163_k19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:19 2005
         (157 letters)



>mm_chr7_118497449_118498005
          Length = 557

 Score =  288 bits (149), Expect = 1e-82
 Identities = 155/157 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagaaagccatggaatcactagctctggctgccaagaagccatgatgcaccaacagcctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 cagaaagccatggaatcactagctctggctgccaagaagccatgatgcaccaacagcctg 298

                                                                       
Query: 61  agctcagagacggataattgcttctggatgctgggccacaggaacttaaagcccagagct 120
           ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 297 agctcagagccggataattgcttctggatgctgggccacaggcacttaaagcccagagct 238

                                                
Query: 121 gtcgacatcctaccccacagatactcgctcaccctcg 157
           |||||||||||||||||||||||||||||||||||||
Sbjct: 237 gtcgacatcctaccccacagatactcgctcaccctcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 557
Length adjustment: 8
Effective length of query: 149
Effective length of database: 549
Effective search space:    81801
Effective search space used:    81801
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)