BAC Information

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BAC

Clone NameMSMg01-163M04
Chromosome7 (Build37)
Map Location 87,195,667 - 87,364,523
singlet/doubletdoublet
Overlap geneZfp710, Idh2, Sema4b
Upstream geneAcan, Hapln3, Mfge8, Abhd2, Rlbp1, BC025462, Polg, AI854517, Rhcg, 5730590G19Rik, Plin, Pex11a, EG626359, EG665900, Mesp1, Mesp2, Anpep, Ap3s2, 2610034B18Rik
Downstream geneCib1, D330012F22Rik, LOC100042374, LOC100042379, Ttll13, Ngrn, Vps33b, Prc1, Rccd1, Unc45a, Hddc3, Man2a2, Fes, Furin, LOC384647, Blm, Crtc3, Iqgap1, LOC100042402, Zscan2, Wdr73, Nmb, Sec11a, Zfp592, Alpk3, Slc28a1, EG623286, LOC100043130, Pde8a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163M04.T7 (MSMg01no163_m04.b1)MSMg01-163M04.TJ (MSMg01no163_m04.g1)
ACCAG362463AG362464
length706714
length of high quality
(start - end)
310 (51 - 360)245 (81 - 325)
definitionCHROMAT_FILE: MSMg01no163_m04.b1 PHD_FILE: MSMg01no163_m04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:25 2005CHROMAT_FILE: MSMg01no163_m04.g1 PHD_FILE: MSMg01no163_m04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,364,217 - 87,364,523)(87,195,667 - 87,195,911)
sequence
NCAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAAACAACCCAGATTACACCAGCCTGCTGCCTTTGAGACAG
ACAACTAAAAACGATCTACACCACCGCACAGAGGCCAAGCTGACGAGGCG
GGACTGAAGGTGCTCTGTCATTCATGGGACATCTTCTTTGGTAAGATAGG
AAGCCAGGGCTTATTACGCCCTACTTCAAAGAAGAGAAATCAGATTCACA
GAAGCTTCATGGTTTGTCTGAAACCATACAACCTTGCTCTCAGCATGGTC
CAGGGACCAAGCCTGCCCAGAATCCACTCTGAGCACAACACTACTGATAC
CTACCGCTCCTTTATGTTTTGCCGGGCATNCCCGGGTCTCGGTATACCAC
TGCTGTGTCTCTCTGTTCACCTTCTAGAACAGGACGTCAAAGGCCTTCTG
CACATCATTCATGGTGAAGACGCAGATGGCAGAGCCTTCTGTGGTCCCTC
TGTGCCTGCAAAGGAAACAGCCAAATTAACTCTGTGCTCAGAGTTGAGAA
GTGAGGCTCGCGACGCCATCAACGGTCTCTAGCCACTCTTTACCCTCCTG
TCCCCAGCTAAATCCTAGCGTCTCACCACTGGGAGGTAAAGACCCCATAG
AAAAGGGTCTTGCGCCAATCCTGAGGGTCGTGCTCCAGGGTGAAGACATC
TTGCAG
AAATCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCTGTAGACCAGGCTGTA
CGCGAACTCAGAAATCTGCCTGCCTCTGTCTCCCAAGTGCTGGGATTAAA
GGCATGCCCAGCCTTCCAAGGTTTTATTATGAAAAATTTTCAAATGTTTT
GAAAAGATGTAATACTTTTACTGTAAACATCCGCACATCGTGGCCCCATA
GGACAGATGCCAGTGGTTCGTCACGCTAACTCCATCTGTCCATGCTAGTT
CTGAAGTTCACTGCAGCCTCTCTTGATTTACTTCATTGAACCCCGAGATA
TCCTGGATGTGGTCTGTGTTTCTCCCTGACANCCCCCTCCGTGCAGCCAC
ACATACCTTTTTAATACTTGACACACAAAGAAAAAATCAGTCATGACCGG
AGAAGTGAATAACATAAAGAGCTGGGTTGTCCCTCAGTGGTCCACTTTGC
TGCCTGTTTTGTCGTGCGAATAAAAAGTGTATGCCATCCTATGTCAGGTC
CCGAGTCCACAACGCTGCCCTTTCCCCCTATGATGGGGCCCGACTTATTT
TTCTTTTTTTGTTACCTTGACTCAATACTTTTGACACACCCCTTGTAACG
TAAAGCTTCGTCTCCCAATTTATAATTTCATATTTTATGTTCCCGAATTC
TCTCATTTATCATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_m04.b1 MSMg01no163_m04.b1 CHROMAT_FILE:
MSMg01no163_m04.b1 PHD_FILE: MSMg01no163_m04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:25 2005
         (310 letters)



>mm_chr7_87364014_87364723
          Length = 710

 Score =  563 bits (291), Expect = e-165
 Identities = 303/307 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcaaacaacccagattacaccagcctgctgcctttgagacagacaactaaaaacg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 510 ggaattcaaacaacccagattacaccagcctgctgcctttgagacagacaactaaaaaca 451

                                                                       
Query: 64  atctacaccaccgcacagaggccaagctgacgaggcgggactgaaggtgctctgtcattc 123
           ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 atctacaccactgcacggaggccaagctgacgaggcgggactgaaggtgctctgtcattc 391

                                                                       
Query: 124 atgggacatcttctttggtaagataggaagccagggcttattacgccctacttcaaagaa 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 atgggacatcttctttggtaagataggaagccagggcttattacgccctacttcaaagaa 331

                                                                       
Query: 184 gagaaatcagattcacagaagcttcatggtttgtctgaaaccatacaaccttgctctcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 gagaaatcagattcacagaagcttcatggtttgtctgaaaccatacaaccttgctctcag 271

                                                                       
Query: 244 catggtccagggaccaagcctgcccagaatccactctgagcacaacactactgataccta 303
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 270 catggtccagggaccaagcctgcccagaagccactctgagcacaacactactgataccta 211

                  
Query: 304 ccgctcc 310
           |||||||
Sbjct: 210 ccgctcc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 710
Length adjustment: 9
Effective length of query: 301
Effective length of database: 701
Effective search space:   211001
Effective search space used:   211001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no163_m04.g1 MSMg01no163_m04.g1 CHROMAT_FILE:
MSMg01no163_m04.g1 PHD_FILE: MSMg01no163_m04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:26 2005
         (245 letters)



>mm_chr7_87195467_87196111
          Length = 645

 Score =  420 bits (217), Expect = e-122
 Identities = 238/245 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagaccaggctgtacgcgaactcagaaatctgcctgcctctgtctcccaagtgc 60
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagaccaggctgtactcgaactcagaaatctgcctgcctctgtctcccaagtgc 260

                                                                       
Query: 61  tgggattaaaggcatgcccagccttccaaggttttattatgaaaaattttcaaatgtttt 120
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggcacgctcagccttccaaggttttattatgaaaaattttcaaatgtttt 320

                                                                       
Query: 121 gaaaagatgtaatacttttactgtaaacatccgcacatcgtggccccataggacagatgc 180
           |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 321 gaaaagttgtaatacttttactgtaaacatccgtacatcgtggccccataggacagatgc 380

                                                                       
Query: 181 cagtggttcgtcacgctaactccatctgtccatgctagttctgaagttcactgcagcctc 240
            |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 381 tagtggttcgtcacgctaactccatctgtccatgcaagttctgaagttcactgcagcctc 440

                
Query: 241 tcttg 245
           |||||
Sbjct: 441 tcttg 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)