BAC Information

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BAC

Clone NameMSMg01-164P06
Chromosome7 (Build37)
Map Location 106,281,188 - 106,281,526
singlet/doubletsinglet
Overlap geneUvrag
Upstream geneCapn5, Omp, B3gnt6, Phca, Tsku, LOC100040269, Gucy2d, LOC100040721, EG434215, A630091E08Rik, 2210018M11Rik, LOC100040769, Prkrir, Wnt11, LOC666978, EG666529
Downstream geneDgat2, Mogat2, Mtap6, Serpinh1, Gdpd5, 2810406K13Rik, Rps3, Rnu15-b, EG449630, Arrb1, EG245190, Slco2b1, Olfr520, Olfr521, Neu3, Spcs2, Xrra1, EG330602, Chrdl2, Pold3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164P06.T7 (MSMg01no164_p06.b1)MSMg01-164P06.TJ (MSMg01no164_p06.g1)
ACCAG363257AG363258
length727739
length of high quality
(start - end)
230 (50 - 279)340 (85 - 424)
definitionCHROMAT_FILE: MSMg01no164_p06.b1 PHD_FILE: MSMg01no164_p06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:56 2005CHROMAT_FILE: MSMg01no164_p06.g1 PHD_FILE: MSMg01no164_p06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCATGTTTACCAGCTCTTGTTGTGCAAATCTTGGACCTTAA
TTTAAAACTATTGGTTTAATAAAAAAAAAAAAAAAAGGCTACAGCCAATT
TCNTGGAGGGATTAGCGGTAGGCAGGTTTTTTAGTTACCTGCTTGAGTGG
GGCAGAAGAAAGAGAAAGCAGAGAACAAGGAGGAGAGGAGAGGAGAGGAG
AGGCGCCTTAAAAACAGAGATACCATGAGCACATGGCCAGGAAAAACAGC
AAGCGTCTGGGGTACACTGCTGGGGAGGTAGCCAGGCCAGCAGTTATAAA
AGGAGATTAGAGGTTATTTTTTTACTGCCCCCGCCCCCCAAAATAACCGT
GCTCTAAGTCTTTTATTTTTACCCCCCCCCGTAGATAAACTTAATTTGAT
TGTACTACATGCTCCCGACGTAGGATAGTTGGTCCGCAACTTAAAGCAAC
CTTTCTACTGTAGTCTCCCCAGTGCCGGGATCTTCTTGGCTGGTTCATTC
TCGGCTGACCCTTATCTGGTCGACGTACCATGACGATGACCTGTCTGGTA
CGTACTTGCGCTTATACTGTTTTTAACAGAATCCCATCAGGTTTTTGCAC
CCATATTCTGTCCACCTGCTTGATCAATCTTCTTTACTCCTGTATCTTCT
GCCTTGCCCTTTCCTATGCTTCCCCTC
NCCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTTCCTAGGAATATT
CAAAATATTCAAAACTGGACAGGCTTGATACCAGCACCAGAACCAGAACA
GGAAGAGCAGCCCTGGGACAGGAGCGGAGTGAGCGTCCAGCCCTGCCCTT
GAGGGGAAGTTTAAAACAATGCCACAGCTCCACTTTAGTTCCAGCCTAAA
GTCAAACCAAGCTGGGGGACACCATGTCAAAGCCCAGAGAGGAGTTATAG
AACCAGGCTCTCTGTGCACTCGCTCGCTCGGACCAGCTGGGAAGGCCCGG
TGCTGGAGAGGCAGGCACTCCCTAGAGCTCTGTTAAAGTCCCTGAGGTCT
CTGGAGCACATTCATGGGCTGGCACCCCCCCCTGCCTCTGAGAACATCAC
ATTTTTTAATTTTTATGTCTGTAAAGTCCCACTATTCCAAAACTTGAATT
TCCACCTTAAAGTAAGATGGACAACGATATCAACTACTAACTAGAAGGTT
GAGTGTTGCGAACTGTAGAGAGGGTTTAGTACTGATGTGCTTTTGCTCTT
GCTTTACGCCCATTTTGCCATCCCCCTCCTCCCTTGTCTTTTTCCCCCAT
TGCGACCCTTGCCTTCCCTTTTACCTAGTTATCCTTTCAGTCTTTCCGTG
TGCCCTGCCATGCCTTGCCGTTTGCTCCTTCCTCCTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_p06.g1 MSMg01no164_p06.g1 CHROMAT_FILE:
MSMg01no164_p06.g1 PHD_FILE: MSMg01no164_p06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:56 2005
         (340 letters)



>mm_chr7_106280988_106281726
          Length = 739

 Score =  619 bits (320), Expect = 0.0
 Identities = 335/340 (98%), Gaps = 1/340 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgttcctaggaatattcaaaatattcaaaactggacaggcttgataccagcaccagaacc 60
           ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||
Sbjct: 201 tgttcctaggaatattcaaaatattcaaaactggacaggcttgataa-agcaccagaacc 259

                                                                       
Query: 61  agaacaggaagagcagccctgggacaggagcggagtgagcgtccagccctgcccttgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agaacaggaagagcagccctgggacaggagcggagtgagcgtccagccctgcccttgagg 319

                                                                       
Query: 121 ggaagtttaaaacaatgccacagctccactttagttccagcctaaagtcaaaccaagctg 180
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 320 ggaagtttaaaacaatgccacagctccacttttgttccagcctaaagtcaaaccaagctg 379

                                                                       
Query: 181 ggggacaccatgtcaaagcccagagaggagttatagaaccaggctctctgtgcactcgct 240
           |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 380 gggggcaccatgtcaaagcccagagaggggttatagaaccaggctctctgtgcactcgct 439

                                                                       
Query: 241 cgctcggaccagctgggaaggcccggtgctggagaggcaggcactccctagagctctgtt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cgctcggaccagctgggaaggcccggtgctggagaggcaggcactccctagagctctgtt 499

                                                   
Query: 301 aaagtccctgaggtctctggagcacattcatgggctggca 340
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaagtccctgaggtctctggagcacattcatgggctggca 539


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 340
Length of database: 739
Length adjustment: 9
Effective length of query: 331
Effective length of database: 730
Effective search space:   241630
Effective search space used:   241630
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)