BAC Information

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BAC

Clone NameMSMg01-165E15
Chromosome7 (Build37)
Map Location 17,795,885 - 17,796,517
singlet/doubletsinglet
Overlap genePsg29
Upstream geneDhx34, Gpr77, C5ar1, 2610014I16Rik, Ccdc9, Bbc3, Sae1, BC057627, Tmem160, Npas1, LOC629352, Grlf1, LOC670915, LOC100038912, Ceacam15, EG666641, LOC434127, Ceacam9, Ap2s1, Slc1a5, Fkrp, Strn4, Prkd2, Dact3, Gng8, Ptgir, Calm3, EG434128, 0710005I19Rik, LOC100042835, LOC434130, Ppp5c, Hif3a, Psg16, LOC100042844, LOC640145, Ceacam3
Downstream geneLOC414361, LOC671132, LOC100042868, Psg-ps1, LOC666767, Psg30, Ppia-ps7_184.1, Ceacam14, EG381852, Ceacam11, Ceacam13, LOC384560, Ceacam12, Igfl3, LOC671190
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165E15.T7 (MSMg01no165_e15.b1)MSMg01-165E15.TJ (MSMg01no165_e15.g1)
ACCAG363493AG363494
length751750
length of high quality
(start - end)		633 (62 - 694)647 (65 - 711)
definitionCHROMAT_FILE: MSMg01no165_e15.b1 PHD_FILE: MSMg01no165_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:23 2005CHROMAT_FILE: MSMg01no165_e15.g1 PHD_FILE: MSMg01no165_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:23 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAATTCAATGT
AATCTGCCAATATCACCACCTGGGGGGATGTGTACAGAGGAAGAGATACG
GTGTATACCAACGGATCCCTGATGCTCCAGGACGTCACTGAGGAAGATGC
AAGAATGTACACACTAGAAACTTTAAACGTAAACTACACAGTTGAAAGAG
CACATGTGCAGTTTTATGTAAACAGTTAAGTGACTCTCAATGGACTCTGG
TTGCTATGTGTGACTTACCCTACTTCCTACACTAGACTGTCAGGACTGGG
TTGTGCCTGCTCTCTCCCCTGCTGCATTGCATCTACTTACTGTAGGATAC
GTACTTCGTAGACAAGCAGCAGTCAATCAGAATCCCTCACCAGTCTCTAC
CTCCACAGACAACAATGTGTGTGGGATAACTCAGCATGAGGGCATCAGCC
TCAGTGCAGACTCTTGGGGTTCTCACTATGCACATGGCCCTAAGAGAGAC
CTTGTGGGAGCCAGGCAAGCACTGGATGAGGGAGCTATGGGGTCTTCACA
GAGAGTACCAGGGAACACTGGCTCCAAAATTTTGCCTCTGGCTGGAGTCT
AGGTCACATTGGGAGCATTATGTTAATGCATGGTGTTGACTTCCTTTCAG
AACTGGCAGGGATCAAGGCTTTACTGATTGTCCAACTCCCATAGAGTGTG
GGGCCAGCTGTGTACTGCCATGATAGCTGGGTTCATGTATGCCATCTGTG
C

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCAGAATCTTGGGACATTGTTGGCCTGACTGATAGCC
ACAGACCTCCCCTGTGGAGGCTGTTGGGGAAGTAACTTGAACAGGAGCCA
GGGGTCCAGGAGACATGATCTAATGCCTTCCATCCCATGTATGTGGAAAT
TACTACCCACCGGGTCCCACTGGGGTTCAAGACATAAGCTCGACTGTAAA
CCAGGCTGTCTGTGCATAGCCCATTGCCCCACAAGCGAGTAACATTTTCT
GGCTAAAAACTAGAATAAAAATACAGATGTCTTACTACTCTATAAACAGG
AAAATGTCCCTAATAAATCATGAGTATGTCAAAATAAGAAACAAAAATGT
ATAGGTTCCAATGATTCCCTTTTTCTTTACTTGCAGATAAAATCTCCATT
CTCCTATTGATCATTTATAACTTTTAGGACAACCACAGCTAAGGAACCAT
ACCATTATGATACTCCTGTGGGCTGCCTACGTTCTACAAGCACAGCTCTC
TGATACCCCACCACAACCACCACTAACTGAATTTGGACCTGTACTTCAAT
GCACATCCCGAACATGCTTATAAAAGTGAATGGCAACTATCATTTCATCC
ATTTATAAATTTTGTTTCTCATTATCAGAAATAATATTATGATAAACTGT
ATTTTATCAGCATAAACCATATGATTATATATCATAAACACCTAAAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_e15.b1 MSMg01no165_e15.b1 CHROMAT_FILE:
MSMg01no165_e15.b1 PHD_FILE: MSMg01no165_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:23 2005
         (633 letters)



>mm_chr7_17795685_17796717
          Length = 1033

 Score = 1178 bits (609), Expect = 0.0
 Identities = 627/633 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   atcaccacctggggggatgtgtacagaggaagagatacggtgtataccaacggatccctg 60
           |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 atcaccacctggggagatgtgtacagaggaagagatacggtgtatgccaacggatccctg 260

                                                                       
Query: 61  atgctccaggacgtcactgaggaagatgcaagaatgtacacactagaaactttaaacgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctccaggacgtcactgaggaagatgcaagaatgtacacactagaaactttaaacgta 320

                                                                       
Query: 121 aactacacagttgaaagagcacatgtgcagttttatgtaaacagttaagtgactctcaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aactacacagttgaaagagcacatgtgcagttttatgtaaacagttaagtgactctcaat 380

                                                                       
Query: 181 ggactctggttgctatgtgtgacttaccctacttcctacactagactgtcaggactgggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ggactctggttgctatgtgtgacttaccctacttcctacactagactgtcaggactgggt 440

                                                                       
Query: 241 tgtgcctgctctctcccctgctgcattgcatctacttactgtaggatacgtacttcgtag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgcctgctctctcccctgctgcattgcatctacttactgtaggatacgtacttcgtag 500

                                                                       
Query: 301 acaagcagcagtcaatcagaatccctcaccagtctctacctccacagacaacaatgtgtg 360
           |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 501 acaagcagcagtcaatcagaatccctcaccagtctctacctccacagagaagaatgtgtg 560

                                                                       
Query: 361 tgggataactcagcatgagggcatcagcctcagtgcagactcttggggttctcactatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgggataactcagcatgagggcatcagcctcagtgcagactcttggggttctcactatgc 620

                                                                       
Query: 421 acatggccctaagagagaccttgtgggagccaggcaagcactggatgagggagctatggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 acatggccctaagagagaccttgtgggagccaggcaagcactggatgagggagctatggg 680

                                                                       
Query: 481 gtcttcacagagagtaccagggaacactggctccaaaattttgcctctggctggagtcta 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtcttcacagagagtaccagggaacactggctccaaaattttgcctctggctggagtcta 740

                                                                       
Query: 541 ggtcacattgggagcattatgttaatgcatggtgttgacttcctttcagaactggcaggg 600
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 741 ggtcacattgggagcattatgttaatgcacggtgttgacttcctttcagaactggcaggg 800

                                            
Query: 601 atcaaggctttactgattgtccaactcccatag 633
           ||| |||||||||||||||||||||||||||||
Sbjct: 801 atcgaggctttactgattgtccaactcccatag 833


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space:   637329
Effective search space used:   637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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