BAC Information

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BAC

Clone NameMSMg01-165G02
Chromosome7 (Build37)
Map Location 13,801,130 - 13,801,803
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043092, V1rg9, V1rg12, V1rg8, V1rg11, Zfp551, EG666065, Zfp606, 2900092C05Rik, EG637908, EG666085, Vmn2r55, LOC629079, LOC629081, EG232875, LOC100043128, LOC100042515, Zfp329, Zfp110, Zfp128, Zscan22, Rps5, 2310014L17Rik, 1810019N24Rik, Zfp324, Zfp446, Slc27a5, ZBTB45, LOC100042553, Trim28, Chmp2a, Ube2m, Mzf1, V1rj3, LOC100043156, V1rk1, LOC666177, EG232887
Downstream geneV1rj2, 6330408A02Rik, Lig1, Pla2g4c, LOC666225, Cabp5, LOC666232, Gm767, LOC666243, 9230107M04Rik, EG666256, LOC666267, LOC100042624, LOC100043194, Sult2a1, EG620627, EG434121, EG629203, LOC677512
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165G02.T7 (MSMg01no165_g02.b1)MSMg01-165G02.TJ (MSMg01no165_g02.g1)
ACCAG363559AG363560
length7221,161
length of high quality
(start - end)
679 (44 - 722)169 (147 - 315)
definitionCHROMAT_FILE: MSMg01no165_g02.b1 PHD_FILE: MSMg01no165_g02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:30 2005CHROMAT_FILE: MSMg01no165_g02.g1 PHD_FILE: MSMg01no165_g02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATCACTTTTGCCCATGAATTCATGTGGAAAGCCAGTTCTTTCTTTGT
TTTTATTTTTTTCTTTTACAAAATCTGTTTACCAGTATTTAAATTCCATT
TTCTTGAATGACAAAAATCGTGCATGCTAATCTTTTGTGATCTCATTGTC
TGTTGATGGCATCTTCCTGTGCTAGTCATAGAGTGAGTCTGTTCAATTTC
TGTTCAGATGATAGTTTGGTATTTTATTCAAGACCTATTATTCTTTGCAG
GAGCAAATACTAAAGACATGGCTAGTAGAGGGAATTTTCAGGACTGTGCT
AGGAGAAATATGTATGAAAAGTTGAAGAAATTAAGGGTAGATACAGGACA
AGGAGAAAGGGTGAATAAAAACAAACTTCTGTTGAATATTGAGTAGGGTA
ACCACCAATCCTTGGTAAAACACAGGAAGGTGTGAGTGATTCCAAGGAAA
TAAATGTGAGCCTAAAAAATCTATAAGGCAAGGAGAGATGAGTATCAAAA
TTAATACAATATAAACAGCATTAGGCCAAACCCACTACATTTCCCATGTC
TTGTCCATTTTTTTTCAATTTTTATTAGATATTTTCTTCATTTACATTTC
AAATGTTAGTCCCCTATACCCTCTCCCCGCCCTGCTCCCCTACCCACCCA
CTCCCACTTCTTGGCCCTGGTG
NTTATCCCCNNNAAATGACGTGAGCCXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGTAATAAAAGTAAATCAA
TAGGATTTTATTACATTTGAATATGTTGCCCCCCCAGAGGCAGAACTGGA
ATGTGGGCCACCACCCATGGTAGCTTATAGTTGGATGAGGCTTGTGGGAA
AGAAGGAGTATGGATGGACTCTGAGAAAAATAAAAATGGGAATGGAGAGG
AGTTATAGCTATATATATATATATATATATATATATATATATATATATAT
ATATATATATATGTATATATATACATCTTGCTCCTGATTACATATATGTG
CGGGCCCCCTTCCATGTATCCCTCTCCCCCCCACCCCCCTCCCGCCTTTT
TTTTTGTGCTCACACCCCCCTCCTCTTTGGGGGGGGCCACATACCCTTTT
TTTTTTTCCCCCCCGCGCACGCCCCCCCCCCCCCCCAAAAAAAAAGCGCG
CGCCACCTCTACACACAGACACACCTCCCCCCCCCCTGCGCCGCCCCCCC
CCCCCCCTCCCCCCCCCCCCCCTCCCCCTCCCCCACCCCCACACACACAC
ACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCTC
CCCCCCCCCCCCCCTCCTCCCTCCCCCCCCCCTCCCCCTCCTCCCCCCCC
CCCCCCCCCCCCCCCCCCCTCCTTCCCCCTCCCCCCCCCCTCCCCTCCTT
CCCCCTCCTCCCCCTCCCCCCCCCCCCCTCCCCCCTTCCCTCCCTCCCCT
CCCCCCTTCTCCCCCCCCCCCTCCCTCTCCCCCCTCTCCCCCCCCCTTCC
CTCCTTCCCCCCTCCCCCCCCCCTCCCCCCCTCCCTCCTCTCCCCTCCCC
CTCCCCCCTCCCCCCCCTCCCCCCCCCTCCCCCCCTCCCCCCCCCCCCCC
CCCCCTCCCCCCCTCTCCCCTCCCCCCCCCTTCTCCCCCCACCTCCCCCT
CCCTCACCCCTTCTCCCCCCCTCCCCTCCTCCTCCCCCCCCCCCCCCCCC
CCCCCCCCCCTTCCCCTCCCCCCCCCCCCTCCCCCCCCCCCCTCCCTCTC
CCCCCCCTCCCTCCCCCTTCCCCCCCTCTCCCCCCCCCCCCCCTCCCCCC
CTCCCCCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_g02.b1 MSMg01no165_g02.b1 CHROMAT_FILE:
MSMg01no165_g02.b1 PHD_FILE: MSMg01no165_g02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:30 2005
         (679 letters)



>mm_chr7_13800926_13802004
          Length = 1079

 Score = 1251 bits (647), Expect = 0.0
 Identities = 668/675 (98%), Gaps = 1/675 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatcacttttgcccatgaattcatgtggaaagccagttctttctttgtttttatt 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatcacttttgtgcatgaattcatgtggaaagccagttctttctttgtttttatt 264

                                                                       
Query: 65  tttttcttttacaaaatctgtttaccagtatttaaattccattttcttgaatgacaaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttttcttttacaaaatctgtttaccagtatttaaattccattttcttgaatgacaaaaa 324

                                                                       
Query: 125 tcgtgcatgctaatcttttgtgatctcattgtctgttgatggcatcttcctgtgctagtc 184
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 tcgtgcatgctaatcttttgtgatctcattgtccgttgatggcatcttcctgtgctagtc 384

                                                                       
Query: 185 atagagtgagtctgttcaatttctgttcagatgatagtttggtattttattcaagaccta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atagagtgagtctgttcaatttctgttcagatgatagtttggtattttattcaagaccta 444

                                                                       
Query: 245 ttattctttgcaggagcaaatactaaagacatggctagtagagggaattttcaggactgt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttattctttgcaggagcaaatactaaagacatggctagtagagggaattttcaggactgt 504

                                                                       
Query: 305 gctaggagaaatatgtatgaaaagttgaagaaattaagggtagatacaggacaaggagaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gctaggagaaatatgtatgaaaagttgaagaaattaagggtagatacaggacaaggagaa 564

                                                                       
Query: 365 agggtgaataaaaacaaacttctgttgaatattgagtagggtaaccaccaatccttggta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agggtgaataaaaacaaacttctgttgaatattgagtagggtaaccaccaatccttggta 624

                                                                       
Query: 425 aaacacaggaaggtgtgagtgattccaaggaaataaatgtgagcctaaaaaatctataag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaacacaggaaggtgtgagtgattccaaggaaataaatgtgagcctaaaaaatctataag 684

                                                                       
Query: 485 gcaaggagagatgagtatcaaaattaatacaatataaacagcattaggccaaacccacta 544
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 685 acaaggagagatgagtatcaaaattaatacaatataaacagcattaggccaaaccaacta 744

                                                                       
Query: 545 catttcccatgtcttgtccattttttttcaatttttattagatattttcttcatttacat 604
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 745 catttcccatgtcttgtccattttttt-caatttttattagatattttcttcatttacat 803

                                                                       
Query: 605 ttcaaatgttagtcccctataccctctccccgccctgctcccctacccacccactcccac 664
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttcaaatgtgagtcccctataccctctccccgccctgctcccctacccacccactcccac 863

                          
Query: 665 ttcttggccctggtg 679
           |||||||||||||||
Sbjct: 864 ttcttggccctggtg 878


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)