BAC Information

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BAC

Clone NameMSMg01-165G24
Chromosome7 (Build37)
Map Location 94,593,258 - 94,593,790
singlet/doubletsinglet
Overlap geneTyr
Upstream geneOlfr299, Olfr298, Olfr297, Olfr296-ps1, Olfr295, Olfr294, Olfr293, Olfr292, Folh1, EG546983, Vmn2r-ps87, LOC637896, EG621430, LOC621477, Nox4
Downstream geneGrm5, Ctsc, LOC100039756, Rab38
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165G24.T7 (MSMg01no165_g24.b1)MSMg01-165G24.TJ (MSMg01no165_g24.g1)
ACCAG363599AG363600
length7351,168
length of high quality
(start - end)		695 (41 - 735)32 (137 - 168)
definitionCHROMAT_FILE: MSMg01no165_g24.b1 PHD_FILE: MSMg01no165_g24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:35 2005CHROMAT_FILE: MSMg01no165_g24.g1 PHD_FILE: MSMg01no165_g24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TTTTGTAAAATTCCCTATTGTATAATTACAAAGATATTTCTAAAATTACT
CTTTAGGATGTTTAAATCTACCACTATACTGTTAAGAACCACAGGGCAGA
GGATTTCACTAATGCTTTGACCAGAAAAAAAAAAAGGTATTATAAATGCT
GAAAACTTTTCAGAAGAATTCACCTATTTTAAATGAATGAATTTTAAGAA
TAAAATGTCTTATATTTGTATATACAACATTTTGTTACATTTTGTTATTA
CTAGTGGATGTTCTAAAATTGATTCTTAAACACTCAACATTTTTACGGCC
CTTCTGTTAATTTTGTTTAATAAACTTATGTTTTGTTTTAAAATAGTTTC
ATTAATTAGATAAAATACTGGGGTTTGGCGTGCATCATACCTTGTTTATT
GAATCAATAACATCTTAAAAGAGTATGGAACTGTTGTTGCAGTTAGCAAG
CCAACACTGATAAATTACATAGGCAAAGTCCATATTAGAAGTGACCCAAT
GTAATTCTTGGACCTGTGCTGTGACTAAGATCCTATCTTACCATTATTCA
CCAAGCTTTCCTATTCTCAGCTATGATAGTTTTTCTCACTTCCATTTATT
AATCTTGACATATTGGAGTCCTACTCAGGTGTCTTATATAAAGTCCCTTA
ACAGAACTTGATTCTTATTGGATATAAGTTTTGTA

AATCCCCTNNNAAAAGTATGGAGCCTGGGGCGCCGGNCGTGCAXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATGTACCAGAAATGTACTGTTT
ATGCAGAGCTGTCTTTTATAAACCCTACCCCTTCCTTTTTGACCGAAGAT
AATTGGAGAAAAATATCACCCACTGAATTCCAGATCTTTTCTTGGGCCGT
CCTCGGTGGAAACTTTTATTTGGGGAAATAGCAAAATGTAACACAGGGTA
AGTAATGTTCCTCACGAAGTTAACGTATGTCTGAAGATCCCATTTCCGAA
TTCCTGAGTCCTCCCATGAAATGTTTAAAGATTAATTGCCAATATGTTTA
TCACCAATTCATTTGGACACTCAGTTTCCATCAAAAGATGAAGTAAAATG
GTTACCACTCCTAAAACCGCAACATGGAGTGGGTAAAGTATGATTTACAC
CTAGTTAACTGTATGCTTGCCTTTAACATTTATATTTTTCCCTATTTACT
TATCCTATGCATTTATTTGGCGGACGAGGGGCTTCGCTCTCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCTCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCCCCCCCTC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCTCCCCCTCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCTCCCCCCTCCCCCCCCCCTCCTCC
CCCCCCCCCCCCCCCCCCTCTCCCCCCCCCCCCCCTCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCTCCCC
CCCCCCCTCTCCTCTCCCCCCCGCCCCCTCCCCCCCTCCCCCCCCCCCCC
CCCCTCCCCTCCCCCTCCCCCCCCCTCCCTCCCCCCCCTCCCCCCCCCTC
CCCCCCCCTCTCCCCCCCCCCCCCCCCCCCCCTCCCTCCCCCTCCCTCCC
CCTCCCTCCTCCCCCCTCCTCACCCCCCCCCCCTCCCCTCTCCCCCCCGT
CCCCCCCCCTCCCCTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_g24.b1 MSMg01no165_g24.b1 CHROMAT_FILE:
MSMg01no165_g24.b1 PHD_FILE: MSMg01no165_g24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:35 2005
         (695 letters)



>mm_chr7_94593258_94594357
          Length = 1100

 Score =  953 bits (493), Expect = 0.0
 Identities = 521/533 (97%), Gaps = 5/533 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttttgtaaaattccctattgtataattacaaagatatttctaaaattactcttt 64
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gaattcttttgtaaaattttctattgtataattacaaagatatttctaaaattactcttt 474

                                                                       
Query: 65  aggatgtttaaatctaccactatactgttaagaaccacagggcagaggatttcactaatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 aggatgtttaaatctaccactatactgttaagaaccacagggcagaggatttcactaatg 414

                                                                       
Query: 125 ctttgaccagaaaaaaaaaaa-----ggtattataaatgctgaaaacttttcagaagaat 179
           |||||||||||||||||||||     ||||||||||||||||||||||||||||| ||||
Sbjct: 413 ctttgaccagaaaaaaaaaaaaagggggtattataaatgctgaaaacttttcagaggaat 354

                                                                       
Query: 180 tcacctattttaaatgaatgaattttaagaataaaatgtcttatatttgtatatacaaca 239
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tcacccattttaaatgaatgaattttaagaataaaatgtcttatatttgtatatacaaca 294

                                                                       
Query: 240 ttttgttacattttgttattactagtggatgttctaaaattgattcttaaacactcaaca 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 293 ttttgttacattttgttattactagtggatgttctaaaattgattcttaaacactcaact 234

                                                                       
Query: 300 tttttacggcccttctgttaattttgtttaataaacttatgttttgttttaaaatagttt 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 tttttacggcccttctgttaattttgtttaataaacttatgttttgttttaaaatagttt 174

                                                                       
Query: 360 cattaattagataaaatactggggtttggcgtgcatcataccttgtttattgaatcaata 419
           || ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 173 cactaattagataaaatactggggtttggcatgcatcataccttgtttattgaatcaata 114

                                                                       
Query: 420 acatcttaaaagagtatggaactgttgttgcagttagcaagccaacactgataaattaca 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 113 acatcttaaaagagtatggaactgttgttgcagttagcaagccaacactgataaattaca 54

                                                                
Query: 480 taggcaaagtccatattagaagtgacccaatgtaattcttggacctgtgctgt 532
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 53  taggcaaagtccatattagaagtgacccaatgtaattcttggacctgtgctgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 695
Length of database: 1100
Length adjustment: 10
Effective length of query: 685
Effective length of database: 1090
Effective search space:   746650
Effective search space used:   746650
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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