BAC Information

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BAC

Clone NameMSMg01-165J20
Chromosome7 (Build37)
Map Location 37,888,351 - 37,888,958
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043872, EG668988, LOC668507, Tshz3
Downstream geneLOC100043874, Zfp536, LOC100043453, EG627844, C80913, Ccne1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165J20.T7 (MSMg01no165_j20.b1)MSMg01-165J20.TJ (MSMg01no165_j20.g1)
ACCAG363710AG363711
length770728
length of high quality
(start - end)
249 (65 - 313)608 (65 - 672)
definitionCHROMAT_FILE: MSMg01no165_j20.b1 PHD_FILE: MSMg01no165_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:50 2005CHROMAT_FILE: MSMg01no165_j20.g1 PHD_FILE: MSMg01no165_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATACCGCGGAATTCCGT
CCACTCTTGCAAAGGCTAACTTCCTGTCTCCAAGGGAGAGGGCCTTGTAA
AAAGGCATAAAAATGAGGCTTCTAAAGGCATCCTGGACTTCAGCTAGATG
TTGCAAAATTACATTTTGATGAGTTCAGTGCAAATGAACCAGAAACATAT
GGATTCAATTTCCCTCGGAATCCACATGGGTTTAAAAACCAAAGGGGGTG
GGGGAGGATGTATTTGAGGAAGAACATTTTAGGTCTCAGCAAATGCCCCA
CATTTGTAAACAGCAGTTTTATTTCTGTGCTGATTGCATCCCGGGCTGGT
TTCCTCTCCCTAATAACACAACACACAGGATGCTGTGCATCGTACCATGG
TTGTGAGGACCCCCCCACAATTCCACTCCTTCTCTTGACTCAGTTCCATG
TCTGATGTGGTACCCAGATATCTCAGCTGAGGCTTTTGACCTCCTTTTTC
TTTTTTTCTGCTTCTGTATAGATTAAATGTACCCCCGATATATCATGTGT
ACTATTTATTTGCTGCAAACTACCCCACATTGCATGAATTTTTTTACCCC
ATGTATCCGAATTTCTAATGCTTGCTTTATTTTTATCCTTCTATTCTTAT
TTTCTTCACCTATTATCTTTATACAACTGTAATCTTTTTAGTTAACCTTA
CACCTTCATCACCATAACTGCCTATCATCTCCATCCTTTTATCTTCTTTT
CCTACCTTTTCCCCCTCTTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCACACCTCTCATTACATGGAAGGCAAGGAGAGAGAG
AGAGGTCCTGGTTAGGAATTAGTCAGCATCTGTAGCTTGCCAAAGGGACA
CAGCAGTCGGCCACCAGCTAACAGGACCTCTGACCAGCACGGATGACCCT
GTGTGCTAATGAGAAAGGAAAATGATATCTACCTATATGTTTGGGACACA
CACCCACAGGGAAGCGTACCTGCTTCCCTGCTGTCTTTTCTGTCTGCTGG
GTGTTTATTATTTTATGATCTCCCTGGATCACCACCTCTGCTCTCTCTGC
AGCACCCTGTCAGCACTCTCCTCTGAAGTGTTGAACTGGTGATGTTCACA
GGACACTCTGGCCACTATTGGCCAAGCACTCGGTGGTCTGTAGGAGAAGC
AGGCATGTCCGCATCACGACAGTTCTCTGATGAGTAAAAACTCCTAGGCT
CACAGTAAGTGTGGGTCTCATCCACCAGAACACCGCTTCAGGGGTCCAAT
GTCACTTTGAGAATGGAAAATGTCTCCGGATGTGAGAAGCATTTAACTTG
TCTTACCACACACAGATCCCCCAAGCTAAATATTGTGTTTGCTCATGACT
TGATTGACATAGCATTGGGATGTAGGGTTCATTTCCATTCTCACCCTGAG
GGAGAAAGTATGGAAGATTCCCCCCTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_j20.g1 MSMg01no165_j20.g1 CHROMAT_FILE:
MSMg01no165_j20.g1 PHD_FILE: MSMg01no165_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:50 2005
         (608 letters)



>mm_chr7_37888151_37889158
          Length = 1008

 Score = 1176 bits (608), Expect = 0.0
 Identities = 608/608 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   cacacctctcattacatggaaggcaaggagagagagagaggtcctggttaggaattagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacacctctcattacatggaaggcaaggagagagagagaggtcctggttaggaattagtc 260

                                                                       
Query: 61  agcatctgtagcttgccaaagggacacagcagtcggccaccagctaacaggacctctgac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcatctgtagcttgccaaagggacacagcagtcggccaccagctaacaggacctctgac 320

                                                                       
Query: 121 cagcacggatgaccctgtgtgctaatgagaaaggaaaatgatatctacctatatgtttgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagcacggatgaccctgtgtgctaatgagaaaggaaaatgatatctacctatatgtttgg 380

                                                                       
Query: 181 gacacacacccacagggaagcgtacctgcttccctgctgtcttttctgtctgctgggtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacacacacccacagggaagcgtacctgcttccctgctgtcttttctgtctgctgggtgt 440

                                                                       
Query: 241 ttattattttatgatctccctggatcaccacctctgctctctctgcagcaccctgtcagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttattattttatgatctccctggatcaccacctctgctctctctgcagcaccctgtcagc 500

                                                                       
Query: 301 actctcctctgaagtgttgaactggtgatgttcacaggacactctggccactattggcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actctcctctgaagtgttgaactggtgatgttcacaggacactctggccactattggcca 560

                                                                       
Query: 361 agcactcggtggtctgtaggagaagcaggcatgtccgcatcacgacagttctctgatgag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agcactcggtggtctgtaggagaagcaggcatgtccgcatcacgacagttctctgatgag 620

                                                                       
Query: 421 taaaaactcctaggctcacagtaagtgtgggtctcatccaccagaacaccgcttcagggg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaaaactcctaggctcacagtaagtgtgggtctcatccaccagaacaccgcttcagggg 680

                                                                       
Query: 481 tccaatgtcactttgagaatggaaaatgtctccggatgtgagaagcatttaacttgtctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccaatgtcactttgagaatggaaaatgtctccggatgtgagaagcatttaacttgtctt 740

                                                                       
Query: 541 accacacacagatcccccaagctaaatattgtgtttgctcatgacttgattgacatagca 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 accacacacagatcccccaagctaaatattgtgtttgctcatgacttgattgacatagca 800

                   
Query: 601 ttgggatg 608
           ||||||||
Sbjct: 801 ttgggatg 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 608
Length of database: 1008
Length adjustment: 10
Effective length of query: 598
Effective length of database: 998
Effective search space:   596804
Effective search space used:   596804
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)