BAC Information

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BAC

Clone NameMSMg01-165O12
Chromosome7 (Build37)
Map Location 95,441,845 - 95,442,552
singlet/doubletsinglet
Overlap geneCtsc
Upstream geneNox4, Tyr, Grm5
Downstream geneLOC100039756, Rab38, LOC100039924, LOC666598, EG621562, Tmem135, LOC100039969
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165O12.T7 (MSMg01no165_o12.b1)MSMg01-165O12.TJ (MSMg01no165_o12.g1)
ACCAG363902AG363903
length7421,200
length of high quality
(start - end)
705 (38 - 742)---
definitionCHROMAT_FILE: MSMg01no165_o12.b1 PHD_FILE: MSMg01no165_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:15 2005CHROMAT_FILE: MSMg01no165_o12.g1 PHD_FILE: MSMg01no165_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCCGCGGAATTCA
TTACTTCCTTCACTGGAAAGTTCTCAGGGACTCTTCCAGCTATAGTGAAC
TCACACATTTTTGTGAGGATTAAAAGACAGAAATCCTGGCCACATTACCC
AGCAATAAATGTAGTCAATTTTTTTTCTCCCAAAGAATTTTTTCATGTAT
ATAAATAGTGGTCTCTGAAAACTGGCTTGCACAGATGAGACACTTAAAGA
TTCCATTCACTTTTGCCAATTCCTACTGCAAAGAAAAGTAGAGACAGCTA
CAATTGGAAGACCCCACAACATGTAGCTCTTAAGTTCAGAGAACTGCTGT
CCCAGGCACTCTTCTGCTTCTTCAAAATTCACATTAAATTGTCACGTATT
CTCCAATGTCCTTAACCTCATTCCAACCACCACCATCACTACCATGGTTT
CATCAACTCTCCTATAACTGCCTAGTAATATTGACCAGCTGGGTATATGC
TACAACTTAAGCTATTTATCCTATAACATTTTACTGTGTTTTGATACTGT
AGTTTTATGCTCTATCCACCTTTACCACAGGAGGCAACCATGCTACCAGG
CTCCACCAAGCTTCCCTTGAATCCCTGGAAAGGCTCACCCTTAATATTTT
TTAGGCAAAAAACTCCTCCTTTCCTTCCTTGCATCTGCCTTTTTTTCCTG
GGCCCCAGAAGTCCAACCTGTACCTTCTGCCCAGCAATTGTC
NNAATCAANNNNNAAAGACGCGAGCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCCCGAGGAAACCGACTGGG
AGGAAGAAGNAGTTTATTACCGCCCCCCTAATCGGTNCAGAAAAAAGCAA
AAAGCGCCTGGCGAAAGTCCGCATGCTGTTCAGCCTCCGGGACAGACGCC
TTCTATGCGGAGCCCCCCCGCGGGGAGGGCGTCAGCCCTGGCGCGAGAGA
CAATGCCCAAAGAGGCAATGCCCAAAGAGACCACGCGCAGAGAGGCAACG
CCCAGACTTCTTCCATTCCAGAGAGGAACAAAGGAAAATACCACAGGCCT
TTCCGGTCCTTGAAGGAGCCGAGGGTGGGCCTGTCCCCCGCTCCGGTAGA
ATACGTGAAGATCCCCCGAGCCGGTCCGGAAGGACGGAACCAATGCTATT
TTTACCTTGGTGCAGTTAGACAGGCTTGCCCCCCCCGACAACCAACTCCT
GCCGACTGGNAAACGATTGGAAAAGCCGCTCTCCCAGCATGGGCCAATAT
ATGGAATGGAGAGCGCTTTGGCCCCAAGCTGCCCCAGCGCAGGCCCCGAC
CAAACCAGCTGCTTTGACCCCCGAGCAGAGAGATTGGACTTCTGACTTGT
TGACCCGTCCGGGAGCTCATTCTGCTGATCCGACCAACCACCATTGGGGA
GCTTATGCCCCCATTTCCTCCCCCGCTATTAGGCCCCCGGAACGCGCCCC
CCCCCAGCCACGTGAAGCCCCCCGCCCCCCTAACCAAGATCCCCCCCGGG
ACCCCCCGGAGTCCCTCCCCAAACTTTGCGCCCCCAACGACCCAACGCCC
CCCAACCCCCATTTTTTCGCCCCACCCCCGAGCCCGCCTCCCCCCCCCGC
CCTACAACCCCCCCCCTCCCATGACCCCCCCCCCCCACGGCACGGCCCCC
CACGCCCCCCTCACCCCCCCCCAACCGAAACCCACGCCCCCCACCCCCCA
CCCCCCCCCCCCCCCCTTCTCCCCCCAAAACCTGCTCCCACACCCCCTCC
CCCCCACAGGCGAGCTTCCTCCCAGCGGCGGCCCCCCTCCTCTCCCCCAC
ACCCCAAACCCCCGCCTCCCCTCGCGCCCCCCACATCTCCCTCCCCACCC
CCCACCCTCCTCCCCTACCCCGCCCCCCCAAACCCTCCCGCCCCCATTCA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_o12.b1 MSMg01no165_o12.b1 CHROMAT_FILE:
MSMg01no165_o12.b1 PHD_FILE: MSMg01no165_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:15 2005
         (705 letters)



>mm_chr7_95441842_95442947
          Length = 1106

 Score = 1253 bits (648), Expect = 0.0
 Identities = 689/708 (97%), Gaps = 11/708 (1%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcattacttccttcactggaaagttctcagggactcttccagctatagtgaactca 66
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 gaattcattacttcctttactggaaagttctcagggactcttccagctatagtgaactca 652

                                                                       
Query: 67  cacatttttgtgaggattaaaagacagaaatcctggccacattacccagcaataaatgta 126
           ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 651 cacgtttttgtgaggattaaaagacagaaatcctggccacattatccagcaataaatgta 592

                                                                       
Query: 127 gtcaa-ttttttttctcccaaagaattttttcatgtatataaatagtggtctctgaaaac 185
           ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 591 gtcaatttttttttctcccaaagaattttttcatgtatataaacagtggtctctgaaaac 532

                                                                       
Query: 186 tggcttgcacagatgagacacttaaagattccattcacttttgccaattcctactgcaaa 245
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 531 tggcttgcacagatgagacacttaaagtttccattcacttttgccaattcctactgcaaa 472

                                                                       
Query: 246 gaaaagtagagacagctacaattggaagaccccacaacatgtagctcttaagttcagaga 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 gaaaagtagagacagctacaattggaagaccccacaacatgtagctcttaagttcagaga 412

                                                                       
Query: 306 actgctgtcccaggcactcttctgcttcttcaaaattcacattaaattgtcacgtattct 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 actgctgtcccaggcactcttctgcttcttcaaaattcacattaaattgtcacgtattct 352

                                                                       
Query: 366 ccaatgtccttaacctcattccaaccaccaccatcactaccatggtttcatcaactctcc 425
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ccaatgtccttaacctcattccaaccaccaccatcactaccatggtttcatcaactctcc 292

                                                                       
Query: 426 tataactgcctagtaatattgaccagctgggtatatgctacaacttaagctatttatcct 485
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 tataactgcctagtaatattgaccagctgggtatatgctacaacttaagctatttatcct 232

                                                                       
Query: 486 ataacattttactgtgttttgatac-------tgtagttttatgctctatccacctttac 538
           |||||||||||||||||||||||||       ||||||||||||||||||||||||||||
Sbjct: 231 ataacattttactgtgttttgatactgtagcgtgtagttttatgctctatccacctttac 172

                                                                       
Query: 539 cacaggaggcaaccatgctaccaggctccaccaagcttcccttgaatccctggaaaggct 598
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 171 cacaggaggcaaccatgctaccaggctccacccagcttcccttgaatccctggaaaggct 112

                                                                       
Query: 599 caccct---taatattttttaggcaaaaaactcctcctttccttccttgcatctgccttt 655
           ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 cacccttaataatattttttaggcaaaaaactcctcctttccttccttgcatctgccttt 52

                                                           
Query: 656 ttttcctgggccccagaagtccaacctgtaccttctgcccagcaattg 703
           ||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 51  tttccctgggccccagaagttcaacctgtaccttctgcccagcaattg 4


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1106
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1096
Effective search space:   761720
Effective search space used:   761720
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)