BAC Information

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BAC

Clone NameMSMg01-165O24
Chromosome7 (Build37)
Map Location 117,501,113 - 117,501,814
singlet/doubletsinglet
Overlap geneSbf2
Upstream geneStk33, EG668320, 1700095J03Rik, Trim66, Rpl27a, St5, LOC100042582, D930014E17Rik, BC051019, Ascl3, Tmem9b, 4930431P19Rik, Nrip3, Scube2, Phxr5, Rab6ip1, Tmem41b, Ipo7, AA474408, Zfp143, Wee1, Swap70, EG668368
Downstream geneLOC668246, Adm, B430319F04Rik, Ampd3, Rnf141, Xlkd1, Mrvi1, Ctr9, Eif4g2, LOC100043221, LOC100042658
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165O24.T7 (MSMg01no165_o24.b1)MSMg01-165O24.TJ (MSMg01no165_o24.g1)
ACCAG363925AG363926
length7451,138
length of high quality
(start - end)		706 (40 - 745)---
definitionCHROMAT_FILE: MSMg01no165_o24.b1 PHD_FILE: MSMg01no165_o24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:17 2005CHROMAT_FILE: MSMg01no165_o24.g1 PHD_FILE: MSMg01no165_o24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGNAAATCCGCGGAATTCC
CATCATCACTCCCGTATAGTGTAGTGCAAAAAACTAGATAAAATGGTAGG
AAACCTGAAGGAACCTAGAGGTAAAATTTTAAAGTAAGTAAGTAAATTTG
GTAAGTGATATAAATTGGTGATGCAATAACTAGTCAGATGACAATCAAAA
CCAAACTTTTACAAAAAGAATTTTTTAAATGATGATATTTAGCTAATGCC
AGTTCTATAAACAATGACATTAAGAAATGCTCACTACTTCAGAGAAAATA
TAATGGAAGATGTTCAGCACTACACTATGAAACATTCAAACTATTAAGAT
CATTAAAAGTTCAAATAAATTAATATTTCAAGTTCTTAGATAATCCATAT
TCTAATATATGCAGTTCCTCTAGGAGTTGACCTGTAGATACATTGAAGCC
TCAGTGTAAAGCCCACCAATGAAGACTGAGAAAGTGCTTATAAGACTTTA
CATAGCAATACAGAAGACCAAGAGTAATCCAAGTAGACTTACAGAAAAAT
ACAACAAGCTATAAAGGTTTTATGTAACAGAAGTAAGTAATCATGGAGAG
AGACTCAAGGATGGACTAAGCATGTACTGTCCTTGCAGAGGACATAAGTT
TGGTTCCCATAACCCATGTTGCAAGAATTCACAGTATCATATAACTCTAG
CACCAGGGATCTGTTGCTCTCTTGTACACCATGGACACCTGCACN

NAATTCCCTNNTATTTGATGCCAGCTGCGGNXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTGCTATGTTAAGAAAATGT
ATTTGNTGTCTTTTTCCAAGAATCCCGAGGCTTAGGTCCTAAAATGCTGT
TTTGTGGGATTATCCAAAGGGAATTTGGGTAAATGGTTGAATTGATATGT
AAATAAAAGAACGAGCACGAGATGAGCTGTCCAGAGAGCTATTGCAGTTC
TTTTAGAATTTGTCTTGTGGGTTTTCTGACCCAAGTCAGAATTTTTCTAT
CAGGTTTTCTGACTTTGGCGGGAAAACCCCAGAGCTATCGAAAGATCTAT
CTAGAGCACAGAGCTGTCTCAAGCAGAGAGCTATCCTCCGCAGAGAGCTG
TCCAGAGGACCATCTCCCGCCGACTACCGAGCTCGTCGCTTTCCCTCATC
ACTAACTTGGGGTTGTTTCTTCCGCTGNCTCCAAATACCCCTTCCTTAGT
ACCCCCAACCCAGCTCAGGTTGGCCCCTTGCCTACATTGGTTTCTTTTTC
CCCTTGCTTCCGCTTTCCCTTGAGACAGGGTCTCCTGCATCCCCGCCTGA
CCTTAAACTCCTTGAGTACCTGAGTAGGTCTCCACACTTTGCACCCTTCC
GCTTCCTCGCGCGACCACCCGCCCCCATACCCCTGCATCCCCCCCCCGCC
CTCACCCCGCGCCCCTACGGACCCCCCCCCCCCCTCCGCCCGCTACCCCC
CCCCCTCCCCTATTTCCCCCCCCCCCCCCCCGCACCTCACCCTCTCCCCC
CGCATCACTTCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTC
CCCCACTCCCCCCCTGCCCTCCCCCTTCCCCCCCCCTCCCCCCCCCCCCC
CCCCCCCCTCCCCCACCCCCCCCCGCCCCCTCGCCCCCCTCCCCCTCCTC
CCCCCCCCTCCCCCCCCCTCCCTCGCTTCCCCCCCCCTCCCCCCCCCCCC
CCCCCCCCCCCCTCTCCCCCCCCTCACCCCCCCCCCCCTCCTTCCCCTCT
CCCCCCTCCCCTGCCCCCCTCCCCCCCCCCCCCCCCTCTCCTCCCACTCT
CCTCCCTCCCCCCCNTACTCCTCCCCTCCCTCTCACCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_o24.b1 MSMg01no165_o24.b1 CHROMAT_FILE:
MSMg01no165_o24.b1 PHD_FILE: MSMg01no165_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:17 2005
         (706 letters)



>mm_chr7_117501063_117502169
          Length = 1107

 Score = 1255 bits (649), Expect = 0.0
 Identities = 689/703 (98%), Gaps = 3/703 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccatcatcactcccgtatagtgtagtgcaaaaaactagataaaatggtaggaaa 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 gaattcccatcatcactcctgtatagtgtagtgcaaaaaactagataaaatggtaggaaa 693

                                                                       
Query: 65  cctgaaggaacctagaggtaaaattttaaagtaagtaagtaaatttggtaagtgatataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cctgaaggaacctagaggtaaaattttaaagtaagtaagtaaatttggtaagtgatataa 633

                                                                       
Query: 125 attggtgatgcaataactagtcagatgacaatcaaaaccaaacttttacaaaaagaattt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 attggtgatgcaataactagtcagatgacaatcaaaaccaaacttttacaaaaagaattt 573

                                                                       
Query: 185 tttaaatgatgatatttagctaatgccagttctataaacaatgacattaagaaatgctca 244
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ttt-aatgatgatatttagctaatgccagttctataaacaatgacattaagaaatgctca 514

                                                                       
Query: 245 ctacttcagagaaaatataatggaagatgttcagcactacactatgaaacattcaaacta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ctacttcagagaaaatataatggaagatgttcagcactacactatgaaacattcaaacta 454

                                                                       
Query: 305 ttaagatcattaaaagttcaaataaattaatatttcaagttcttagataatccatattct 364
           |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct: 453 ttaagatcattaaaagttcaaataaattgatatttcaagttcttagatactccatattct 394

                                                                       
Query: 365 aatatatgcagttcctctaggagttgacctgtagatacattgaagcctcagtgtaaagcc 424
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 aatatatgcagttcctccaggagttgacctgtagatacattgaagcctcagtgtaaagcc 334

                                                                       
Query: 425 caccaatgaagactgagaaagtgcttataagacttt--acatagcaatacagaagaccaa 482
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 333 caccaatgaagactgagaaagtgcttataagactttaaacatagcaatacagaagaccaa 274

                                                                       
Query: 483 gagtaatccaagtagacttacagaaaaatacaacaagctataaaggttttatgtaacaga 542
           ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 273 gagtagtccaagtagacttacagaaaaatacaacaagctataacggttttatgtaacaga 214

                                                                       
Query: 543 agtaagtaatcatggagagagactcaaggatggactaagcatgtactgtccttgcagagg 602
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 agtaagtaaccatggagagagactcaaggatggactaagcatgtactgtccttgcagagg 154

                                                                       
Query: 603 acataagtttggttcccataacccatgttgcaagaattcacagtatcatataactctagc 662
           |||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 153 acataagtttggttcctataacccatgttgcaagaattcacagcatcatataactctagc 94

                                                      
Query: 663 accagggatctgttgctctcttgtacaccatggacacctgcac 705
           |||||||||||| ||| ||||||||||||||||||||||||||
Sbjct: 93  accagggatctgatgccctcttgtacaccatggacacctgcac 51


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1107
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1097
Effective search space:   763512
Effective search space used:   763512
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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