BAC Information

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BAC

Clone NameMSMg01-167F16
Chromosome7 (Build37)
Map Location 31,203,936 - 31,318,476
singlet/doubletdoublet
Overlap geneHcst, AY078069, Aplp1, Kirrel2, Nphs1, LOC100034728, Prodh2, Gm1082, Snx26
Upstream geneSipa1l3, LOC100043791, 4932431P20Rik, 4930432E11Rik, 1700067C01Rik, Zfp84, LOC100043794, Zfp30, EG625349, 6330581L23Rik, BC027344, Zfp420, Zfp27, Zfp74, LOC625437, LOC100043796, Zfp568, Zfp14, LOC100043798, Zfp82, Zfp566, Zfp260, Zfp382, Zfp146, EG330503, Cox7a1, Capns1, Tbcb, Polr2i, Ovol3, Wdr62, EG668354, 1700020L13Rik, Clip3, Alkbh6, AI428936, 0610010E21Rik, Lrfn3, Tyrobp
Downstream geneBC053749, Hspb6, 1810054G18Rik, Psenen, U2af1l4, Tmem149, Wbp7, Zbtb32, Upk1a, Cox6b1, Etv2, 3100004P22Rik, 2310022K01Rik, 4930479M11Rik, 2200002J24Rik, EG233075, Atp4a, Tmem147, Gapdhs, Sbsn, Dmkn, Krtdap, Ffar2, Ffar3, Ffar1, Cd22, Mag, Hamp2, Usf2-ps1, Hamp1, Usf2, LOC100043823, Lsr, Tmem162, Fxyd5, Fxyd7, Fxyd1, Lgi4, Fxyd3, Hpn, Scn1b, Gramd1a, LOC672598, LOC100043323, LOC100043827, Apbh, Abpe, LOC100043326, EG384585, LOC100043328, LOC100043331, LOC626181, LOC100043334
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167F16.T7 (MSMg01no167_f16.b1)MSMg01-167F16.TJ (MSMg01no167_f16.g1)
ACCAG364868AG364869
length712733
length of high quality
(start - end)		654 (46 - 699)377 (78 - 454)
definitionCHROMAT_FILE: MSMg01no167_f16.b1 PHD_FILE: MSMg01no167_f16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:05 2005CHROMAT_FILE: MSMg01no167_f16.g1 PHD_FILE: MSMg01no167_f16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,317,827 - 31,318,476)(31,203,936 - 31,204,312)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTGAGAGCCACGGAAGCAGGAAAACCAGTCACATTTGTACTTTGT
GGAAAGCATCATGCCAGGAGGGGGAAAGATTGGGAACAGAAGACTGAGAT
GTGGACAGTGGCAAGTGACCGTACCCTTGCTGTATGGTTACTACAGAAGG
GTCTTAAACACGCACAGACAGGATCGGCATGCCCTCGCTCCTGTTGCCTG
CTCACCCTTGGTCCCTGCACCTCCAGTCCTTCCTCCCAGACCACACAGGA
AGAAACAGGCTGACTCCAGCCCAGCACTCATCTCCTGCTGACCTGCCCTT
TTACCCCGTGCTGCAGGACAGTGTGGAGAGCCTCCTGGCCCAAGGCCCAA
GCTTGCAGATAACAATGCTCCTGTTGTTCCCGCTCCCATCTCTGGGGGCC
TCTGATTCTCTCTCTGCTCTACAGGCCCGCAGCACTGACAGCCTGGATGG
CCCAGGGGAGGGCTCAGTGCAGCCCGTACCCACTACTGGGGGGCCGGGTA
CAAAGGGGAAGCCTGGGAAGAGGTGAGAGGATGCCAGAGGGTTTAGCTGA
GGGAGGAGGGAAGCCCCAGGAGATGATATTTTGCCGTGGATGATATTTTG
CTTGTCTTCCAGGCTCTCGGCTCCTCGAGGCCCTTTCCCCCGGCTGGCTG
ACTGTGCCCATT

NNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTGGGGACTCTTGAGAGGCTGGGA
AAATGCCAGAGCCCTGGAGGCTGTGGCTCCTCCCCCTGCTGTTGCTGCAT
TGGCTGTTTGCTGGATGGCTGGTGGTTAAATGCTTTTTGGCTACTTTACT
GGGGTCTAGCACCCTTCTCCATCCCAGTCCCTTCCAACCCCCCTAACACC
AGGTAAGCAAGAAAGAAGATTAGAGGGGGAAGGGGTTGTAGACCACTTTA
GACAACTTCCTGCTGGTTAGGGTTGTCAAGTTCTAGGGACAAGCTCTTAG
GATGTCTCTAACCAGCAATCCAGCAAAAGGGGCAACAATCGGAGCACTAG
CCACTGTTGCGACCTCTACCCCTCTGGCCTCTTTATACCGCTCAAGAGTC
CCCAGAATTCCAAAAGTAAACTATCTTCAGCTGGCAGGATCACACCCCTG
CCAGAGTATGAGACAAATCATAGTCACCTGCCACGGCTAATCTTAAGCAA
CCCCATATCTCAGACCTGGGATTAAAACAAAAGCGTCCACATAGCCTAAC
TACATTTTTTAAGAATACCATAATTCTCACTGTTTCTTATTACCTTTATC
TTTTTTCTTTGTGGAAAAGGACACTTGCACGTAAACTTTCTTCCCCATCC
CTCCCTCTCTCAGCTTTTTATACTTGCTACAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_f16.b1 MSMg01no167_f16.b1 CHROMAT_FILE:
MSMg01no167_f16.b1 PHD_FILE: MSMg01no167_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:05 2005
         (654 letters)



>mm_chr7_31317623_31318676
          Length = 1054

 Score = 1195 bits (618), Expect = 0.0
 Identities = 642/650 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgagagccacggaagcaggaaaaccagtcacatttgtactttgtggaaagcat 64
           ||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 854 gaattcctgagagtcacggaagcaggaaaaccaatcacatttgtactttgtggaaagcat 795

                                                                       
Query: 65  catgccaggagggggaaagattgggaacagaagactgagatgtggacagtggcaagtgac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 794 catgccaggagggggaaagattgggaacagaagactgagatgtggacagtggcaagtgac 735

                                                                       
Query: 125 cgtacccttgctgtatggttactacagaagggtcttaaacacgcacagacaggatcggca 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 734 cgtacccttgctgtatggttgctacagaagggtcttaaacacgcacagacaggatcggca 675

                                                                       
Query: 185 tgccctcgctcctgttgcctgctcacccttggtccctgcacctccagtccttcctcccag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 tgccctcgctcctgttgcctgctcacccttggtccctgcacctccagtccttcctcccag 615

                                                                       
Query: 245 accacacaggaagaaacaggctgactccagcccagcactcatctcctgctgacctgccct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 accacacaggaagaaacaggctgactccagcccagcactcatctcctgctgacctgccct 555

                                                                       
Query: 305 tttaccccgtgctgcaggacagtgtggagagcctcctggcccaaggcccaagcttgcaga 364
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 tttaccccacgctgcaggacagtgtggagagcctcctggcccaaggcccaagcttgcaga 495

                                                                       
Query: 365 taacaatgctcctgttgttcccgctcccatctctgggggcctctgattctctctctgctc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 taacaatgctcctgttgttcccgctcccatctctgggggcctctgattctctctctgctc 435

                                                                       
Query: 425 tacaggcccgcagcactgacagcctggatggcccaggggagggctcagtgcagcccgtac 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tacaggcccgcagcactgacagcctggatggcccaggggagggctcagtgcagcccgtac 375

                                                                       
Query: 485 ccactactggggggccgggtacaaaggggaagcctgggaagaggtgagaggatgccagag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ccactactggggggccgggtacaaaggggaagcctgggaagaggtgagaggatgccagag 315

                                                                       
Query: 545 ggtttagctgagggaggagggaagccccaggagatgatattttgccgtggatgatatttt 604
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 314 ggtttagctgagggaggagggaagccccaggagatgatattttgttgtggatgatatttt 255

                                                             
Query: 605 gcttgtcttccaggctctcggctcctcgaggccctttcccccggctggct 654
           ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 254 gcttgtcttccaggctctcagctcctcgaggccctttcccccggctggct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space:   672336
Effective search space used:   672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no167_f16.g1 MSMg01no167_f16.g1 CHROMAT_FILE:
MSMg01no167_f16.g1 PHD_FILE: MSMg01no167_f16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:05 2005
         (377 letters)



>mm_chr7_31203736_31204512
          Length = 777

 Score =  690 bits (357), Expect = 0.0
 Identities = 372/377 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggactcttgagaggctgggaaaatgccagagccctggaggctgtggctcctccccct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggggactcttgagaggctgggaaaatgccagagccctggaggctgtggctcctccccct 260

                                                                       
Query: 61  gctgttgctgcattggctgtttgctggatggctggtggttaaatgctttttggctacttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gctgttgctgcattggctgtttgctggatggctggtggttaaatgctttttggctacttt 320

                                                                       
Query: 121 actggggtctagcacccttctccatcccagtcccttccaacccccctaacaccaggtaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actggggtctagcacccttctccatcccagtcccttccaacccccctaacaccaggtaag 380

                                                                       
Query: 181 caagaaagaagattagagggggaaggggttgtagaccactttagacaacttcctgctggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagaaagaagattagagggggaaggggttgtagaccactttagacaacttcctgctggt 440

                                                                       
Query: 241 tagggttgtcaagttctagggacaagctcttaggatgtctctaaccagcaatccagcaaa 300
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 taggggtgtcaagttctagggacaagctcttaggatgtctctaaccagcaatccagcaaa 500

                                                                       
Query: 301 aggggcaacaatcggagcactagccactgttgcgacctctacccctctggcctctttata 360
           |||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||
Sbjct: 501 aggggcaacaatcggagcactagccactgttgcggcctctagggctctggcctctttata 560

                            
Query: 361 ccgctcaagagtcccca 377
           |||||||||||||||||
Sbjct: 561 ccgctcaagagtcccca 577


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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