BAC Information

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BAC

Clone NameMSMg01-167M08
Chromosome7 (Build37)
Map Location 101,576,338 - 101,576,912
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666783, EG638305, EG545982
Downstream geneEG666816, LOC100040132
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167M08.T7 (MSMg01no167_m08.b1)MSMg01-167M08.TJ (MSMg01no167_m08.g1)
ACCAG365154AG365155
length732696
length of high quality
(start - end)
687 (46 - 732)575 (72 - 646)
definitionCHROMAT_FILE: MSMg01no167_m08.b1 PHD_FILE: MSMg01no167_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:37 2005CHROMAT_FILE: MSMg01no167_m08.g1 PHD_FILE: MSMg01no167_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCAGCTGAGCAATATTGAGTGGTCAAGAAGCACCTGAAGAAGTGT
TCAACATTCTTAGTCATCAGGGAAATGCAAATAAAAATGACCCTGAGATT
CCACCTTATACCAGTCAGAACGGCTAAGATCAAAACTCAGGTGACAGCAG
GTGCAAGCAAGGATGTGGAGAAAGAGGAACACTTCCATTTTTGGTGGGAT
TGCAAGCTGGTACAACCACTATAGAAGTCTGTCTGTCTGTTCTTTAGAGA
ACTGGACATTGTGCTACCTGATGACCCACCTATACCACTCCTGGACATAT
ACCCAGAAGATGCTCCTACATATAACAAGGACATATGCTCCACTATGATC
ATAACAGTCTTATTTTAATAGCCAGAAGCTGGAAACAACCCAAATTCCCT
TCAACAGAGGAATAGATACAGAAAATACGGGACATTTACACAATGGAGTA
CTACTCAGCTATAAAAATCAATGACTTCATGAAATTCTTAGGCAAATGGA
TAGAACTGAAAAATATCATCCTGAGTGAGGTAACCCAATCATAGAAAAAC
ATACATACTATGCACTCACTGAAAAGTGGATATTAGACCCAAAACTTGGA
ATTTCCAAGATATATTCACAGACAACCTGATTCTCAAGAAGGAAGACCAC
AGTGTGGATGCTTCTGTCCTTCCTAGAAGGGG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTGCCTCAAAGAATTCTCACAAACGGAGACTTATTACGAAT
TAAGATTGGAGCCTGATTGAGGCTCTACATCATGCTGTGTGGTAAGTCTT
TTTGGCAAGAGTCTTACAGGTTTGGTGCCAAAACATCTGCACCTGTAGCA
CCTGTCATAGGAAAGCATTAGCACAAAAGGTGATAATGAGGGGAAGTGCA
GAGACGCTCAGTATTGGATTCTTGATTGCAAAATCTGTTACATAATAAAG
TTGGCATTAGATATTTTTTTTATTGGTTCATGAGTAACTTTTTATTTGGT
TTGTGGTTATCTGTATTCAGTTTTGTCTATCTTTTAGGACGTTTACAATT
TTTGACCTGCAAAGATCCACTTATTTATCTTCTTTCTTCTCTGTTCCTTT
ACTGTTGCTCTCTTTGTATATCAGCTTAGCACATTTTAACTTAGGACCCA
GGTACTTTGGCTGTCTACTGGTATAGGGAATAAACGAAGAAATACTTACT
TGTGAAGCTGTCGGTGTGGTAGACTCAAAGCAAGATAAACACAGGCTGTA
TCATTTGACCAAATATGACCATTTCATTCACATTAATGATATTCATCCCT
GAAACCTGTACTGCATTACATAACCTAGTCTAGATCACCTTACACN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_m08.g1 MSMg01no167_m08.g1 CHROMAT_FILE:
MSMg01no167_m08.g1 PHD_FILE: MSMg01no167_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:37 2005
         (575 letters)



>mm_chr7_101576138_101577112
          Length = 975

 Score = 1044 bits (540), Expect = 0.0
 Identities = 567/578 (98%), Gaps = 6/578 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   attctcacaaacggagacttattacgaattaagattggagcctgattgaggctctacatc 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 attctcacaaacggagacttattacgaattgagattggagcctgattgaggctctacatc 260

                                                                       
Query: 61  atgctgtgtggtaagtctttttggcaagagtcttacaggtttggtgccaaaacatctgca 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 261 atgctgtgtggtaagtctttttggcaagagtcttacag-tttggtgccaaaacatctgca 319

                                                                       
Query: 121 cctgtagcacctgtcataggaaagcattagcacaaaaggtgataatgaggggaagtgcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cctgtagcacctgtcataggaaagcattagcacaaaaggtgataatgaggggaagtgcag 379

                                                                       
Query: 181 agacgctcagtattggattcttgattgcaaaatctgttacataataaagttggcattaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agacgctcagtattggattcttgattgcaaaatctgttacataataaagttggcattaga 439

                                                                       
Query: 241 tatttttttta---ttggttcatgagtaactttttatttggtttgtggttatctgtattc 297
           |||||| |  |   ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tattttat--acaattggttcatgagtaactttttatttggtttgtggttatctgtattc 497

                                                                       
Query: 298 agttttgtctatcttttaggacgtttacaatttttgacctgcaaagatccacttatttat 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 agttttgtctatcttttaggacgtttacaatttttgacctgcaaagatccacttatttat 557

                                                                       
Query: 358 cttctttcttctctgttcctttactgttgctctctttgtatatcagcttagcacatttta 417
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cttctttcttctctcttcctttactgttgctctctttgtatatcagcttagcacatttta 617

                                                                       
Query: 418 acttaggacccaggtactttggctgtctactggtatagggaataaacgaagaaatactta 477
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 acttaggacccaggtacttcggctgtctactggtatagggaataaacgaagaaatactta 677

                                                                       
Query: 478 cttgtgaagctgtcggtgtggtagactcaaagcaagataaacacaggctgtatcatttga 537
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cttgtgaagctgtcagtgtggtagactcaaagcaagataaacacaggctgtatcatttga 737

                                                 
Query: 538 ccaaatatgaccatttcattcacattaatgatattcat 575
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ccaaatatgaccatttcattcacattaatgatattcat 775


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 575
Length of database: 975
Length adjustment: 10
Effective length of query: 565
Effective length of database: 965
Effective search space:   545225
Effective search space used:   545225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)