BAC Information

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BAC

Clone NameMSMg01-167P08
Chromosome7 (Build37)
Map Location 141,434,831 - 141,435,245
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668747, 4930404H21Rik, LOC100043237, 2700050L05Rik, Mmp21, Uros, Bccip, Dhx32, LOC100043695, Fank1, Adam12, A130023I24Rik
Downstream gene4933400E14Rik, LOC100043248, LOC100043699, LOC668750, Dock1, B830028B13Rik, EG668693
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167P08.T7 (MSMg01no167_p08.b1)MSMg01-167P08.TJ (MSMg01no167_p08.g1)
ACCAG365287AG365288
length771761
length of high quality
(start - end)
365 (36 - 400)416 (76 - 491)
definitionCHROMAT_FILE: MSMg01no167_p08.b1 PHD_FILE: MSMg01no167_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:51 2005CHROMAT_FILE: MSMg01no167_p08.g1 PHD_FILE: MSMg01no167_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATTT
GCTACCAAGTCGTGAAGTCTTTTTGCTGTATTCATTAGAGTTTGGGTTGT
AGCATTTTGTGTTATGCATCTTTCTGGTTTGGGTATTTCGGAGTAATGAT
AGTAGATTAATAAAATGGGAGAGATGTGTTCTACTGTTTGGATGAAATTA
TTTAGAATTGGTCTTAAATTTTTTTTAAAGTGTTTGGTAGAATTTTTCAA
TACGATCATGGAGCTATTTGTTTAAAAGAATAAATTATGAGCTTTAAAAT
TCCTTGAATGCCTATAAGGATAGTCAGCTATGTATTTGACATTAAATGGG
TTTTAGTAATTTGTTTCTCAAAGGAGTTGACTGTTTTGTCTCAGTTGGTC
AAGGCTCTCTGTGTAGAGTTTATGATATTCTCTAGTTGTCTTTTGGGCAT
CTTTTGGGTCTTAGGCATGTTTCATGTCTGCAGAATTGTTTATAGTATTC
TAATTGTTAATTGTCTTTTTAACACCCAGTGTGTTTGTTGTTTATACTAC
TTCTTGCTACTTGATTTTGACCCTGCTCTCTTTTTTCTTCTCTATTTTTT
TCCACAAGCTTTCTCTAGCTCCTTTGCTATTAGTCCCTCTTTCTTCCCTC
CTTTTTTTTCTCTTTTTTTTATTCTTTCTGCTCTCCCTTTCGTTATATAT
ATCAACGATAGTCCTTCCACAGCCACCCCACCATACCTCTCCTTCTCGAC
TTGTATATCTTAACCATTCTN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATAAGCACAGACATGGATGAAGAAG
TTTGTACAGGTGACATTATTTAATAAAGTAACTATTAGGGAAATGTTGGA
ATGATGTAACCAAGTCAAGTCTCCTGAAATAGTGACATAAAATCATACTG
ATCGAGAAGGAAAAGAAGCAAGATTTAAACAAAAATAGTGTAGAAGTTTT
GTGTGGATTGTCATTCTCTCTCTGTCTTTGTCTGTCTCTCTGTCTCTGTC
TCTCTCTCATATCTCCTCCCTTCTTCCCTTGCTCCCTCCAGCTGTATGAA
TGTCTATAAAAATCATAGAAAAAGCAGCAAAATATTCACACTTGTTATTT
TGGGTTGACGGAATTTTGACCAACTTTTGTTTCGTATTAAAATTTCTACA
GTGACAAAGTCTGTGTATGTGTGTGTGTGTGTGTGTGTGTAATTGGCTAC
CCTTTATTGTGTTCTATTTCTTCTAGAAATTGATTGGTTTCCTCTGACAT
AATTTACCCTGGTTACGATGTCTTATATTTTTCCTTTTTTTCCCTTCTTT
ATTCTCTTCATAATTAGTTGTACTTTTCTTATATTTTTACAAGTTATCCC
CCCCCATCCACATTTTATTTTTTTTTTTTGTTATTGCCTACTCCCTAGCC
TCCCCTGTATACTTAAGATATATCCATGTTCTTCATTCCCTATTTTTTTC
TCTTCTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_p08.g1 MSMg01no167_p08.g1 CHROMAT_FILE:
MSMg01no167_p08.g1 PHD_FILE: MSMg01no167_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:51 2005
         (416 letters)



>mm_chr7_141434631_141435446
          Length = 816

 Score =  756 bits (391), Expect = 0.0
 Identities = 409/415 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ataagcacagacatggatgaagaagtttgtacaggtgacattatttaataaagtaactat 60
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 201 ataagcacagacatggatgaagaagtttgtacaggtgaaattatttaataaagtaactat 260

                                                                       
Query: 61  tagggaaatgttggaatgatgtaaccaagtcaagtctcctgaaatagtgacataaaatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagggaaatgttggaatgatgtaaccaagtcaagtctcctgaaatagtgacataaaatca 320

                                                                       
Query: 121 tactgatcgagaaggaaaagaagcaagatttaaacaaaaatagtgtagaagttttgtgtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactgatcgagaaggaaaagaagcaagatttaaacaaaaatagtgtagaagttttgtgtg 380

                                                                       
Query: 181 gattgtcattctctctctgtctttgtctgtctctctgtctctgtctctctctcatatctc 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gattgtcattctctctctgcctttgtctgtctctctgtctctgtctctctctcatatctc 440

                                                                       
Query: 241 ctcccttcttcccttgctccctccagctgtatgaatgtctataaaaatcatagaaaaagc 300
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 441 ctcccttcttcccttgctccctccaactgtatgaatgtctataaaaatcatagaaaaagc 500

                                                                       
Query: 301 agcaaaatattcacacttgttattttgggttgacggaattttgaccaacttttgtttcgt 360
           ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||
Sbjct: 501 agcaaaatattcacacttgttattttgggttgacggaattttgagtaacttttgtttcgt 560

                                                                  
Query: 361 attaaaatttctacagtgacaaagtctgtgtatgtgtgtgtgtgtgtgtgtgtgt 415
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 561 attaaaatttctacagtgacaaagtctgtgtgtgtgtgtgtgtgtgtgtgtgtgt 615


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)