Query= MSMg01no168_f15.b1 MSMg01no168_f15.b1 CHROMAT_FILE:
MSMg01no168_f15.b1 PHD_FILE: MSMg01no168_f15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:31 2005
(311 letters)
>mm_chr7_122879025_122879735
Length = 711
Score = 559 bits (289), Expect = e-164
Identities = 303/311 (97%), Gaps = 7/311 (2%)
Strand = Plus / Plus
Query: 4 ggaattccagtctagcctagtctacagaaagatagtcttaaacaataacaacaacaacaa 63
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccagtctagcctagtctacagaaggatagtcttaaacaataacaacaacaacaa 263
Query: 64 caaatcaacaataatacacgtgtttgatttcagtactttacactattcttagccttcatt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caaatcaacaataatacacgtgtttgatttcagtactttacactattcttagccttcatt 323
Query: 124 tactggtacttagatgtatcaattacatgatacgaataacccaacatttagaagcttcag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tactggtacttagatgtatcaattacatgatacgaataacccaacatttagaagcttcag 383
Query: 184 acgttaagaagcgttccaaagcacatagaacaaccacaaatacctgctccagatgctaag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 acgttaagaagcgttccaaagcacatagaacaaccacaaatacctgctccagatgctaag 443
Query: 244 aaacccatggtgcctacatggactcatatgtttt---atataaaaataaaaattaatatg 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 444 aaacccatggtgcctacatggactcatatg----caaatataaaaataaaaattaatatg 499
Query: 301 caagcaagttt 311
|||||||||||
Sbjct: 500 caagcaagttt 510
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space: 212004
Effective search space used: 212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no168_f15.g1 MSMg01no168_f15.g1 CHROMAT_FILE:
MSMg01no168_f15.g1 PHD_FILE: MSMg01no168_f15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:31 2005
(240 letters)
>mm_chr7_123005827_123006466
Length = 640
Score = 418 bits (216), Expect = e-121
Identities = 232/240 (96%), Gaps = 5/240 (2%)
Strand = Plus / Minus
Query: 1 cttatcagctggagttacaggcagttatgagctgccaggtgggcgctgggaactgaaccc 60
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 555 cttatcacctggagttacaggcagttatgagctgccaggtgggtgctgggaactgaaccc 496
Query: 61 catccctctgcaaggacaataagcactcttaatgcttaatggagccacctctccagatcc 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 495 catccctctgcaaggacaataagcactcttaatgct-----gagccacctctccagatcc 441
Query: 121 tgtttttccagttttgatatatacttattatttgattgagtaccatcattaatatttgtc 180
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 440 tgtttttccagttttgatatatacttattatttaattgagtaccatcattaatatttgtc 381
Query: 181 tgtgttgattactgctcaggttttccacgattctccacatgaggtcatctgaactctggc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtgttgattactgctcaggttttccacgattctccacatgaggtcatctgaactctggc 321
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
