BAC Information

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BAC

Clone NameMSMg01-168F22
Chromosome7 (Build37)
Map Location 144,872,853 - 144,873,134
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621677, EG668771, Mgmt, EG621804, Ebf3, 9430038I01Rik, Txnl2
Downstream geneLOC435235, Tcerg1l, LOC100043290
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168F22.T7 (MSMg01no168_f22.b1)MSMg01-168F22.TJ (MSMg01no168_f22.g1)
ACCAG365577AG365578
length734735
length of high quality
(start - end)
312 (44 - 355)282 (78 - 359)
definitionCHROMAT_FILE: MSMg01no168_f22.b1 PHD_FILE: MSMg01no168_f22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:32 2005CHROMAT_FILE: MSMg01no168_f22.g1 PHD_FILE: MSMg01no168_f22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:37:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTCTTTATGCATTCGCAGAGAGAGACCAAATTTGGGGGGTAGGAGGA
GAGTCAGACTCCATCTTGGAGAACCTGACCTAAGTTTGAACTCAAGTAAA
CTACTAACAGGCTGATACCTAGTACCAGTTTCCAGGTTACCTCCTCCCCA
ATAACACCTGCATCTAGCACCAGTCTCCAGGTTATTCAAAAAAAAAAAAA
ATCTGTACCTCCAGGTTATAAGCCCACCCCTGTCTAATAACCACCAGGGG
GAGAAGTTAAGTTTATTGTTTGGCTCCCAGCACCAGCCAATTATATCAAA
GGTTTACAGTANTTCCCCAAAAGCCGAACCCCATGTTAGAAATANTTATA
ATTTAATTGTCATTTCCTATAAAAAAAAAAACTGATGAGGGTTGGGGGCC
TTTCTCCAATAAAACCATCCTGTGGGTCCGTGGCGAATTAAGCCCAAGCT
TGAGCTTGTGAATAATAATAAAAAAAGACTCTTGTGTGATTGGCTCCTGA
TTGTTCTTTTGTGGTTCACAAATTGCTTCCTGGTTCTACTCCAGCTACTC
TTCCCCTGCTGACACTGATCACTCATCCTGATAATTCCTACCCATTCCTC
AATTTTATACACCCCCTTGTTTGCTTCCATTAAAGAGAGCTTGTTTCCCC
TACTTATTTTTTTAGGTAATTGTCACCTTCTTCC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTTCCTCTGAGAAGCTGGGCAA
AGTGACTCCTAGGGTGGCCCTCCAGCTGCACAGGGATAGGTGCAGGGCTG
GCAGTGGAGCGCTTTTTCTCTGGAGTATTCTCCTTCCAACACTTATTTAT
GCCTTTTGAGTTCAGTTTTGGATAAGGATGGATTTATCTTGCTCATGCCT
CGTGTGGTGACAGTATTTAATGAAGAGACATTTCAAGGCATCTTCTGAAC
TTGTGAATCTCGAGACAAGTTTTATAGCTTCACCAAATTCACTTTCTAAA
ACAAGTCCTGAATTTAATTTCNTTAACGAAAGCAATCCAGAAAGTATGGT
GTTGNTGGTCGGNTCAATGTTCCATAAAAAAAGACTTCCCTTGCGGGCTT
TAGTGAACCCACAGATCTCGAAGCAAGTACTTACAAACTGCAGGAAATTG
ACTACCAAGAATGTGAAATAACTCATTTAGTTTCTGTCAGAATTCCAACA
CAGGAAGATCTGCTCTGCATCTGTGTGGATCTCTTTGCTGAGTTAGGATT
TCTGACATCTCTTCACAAGACGTACTTCTGGTTACCGGGGTCTTGAGTTT
GCATTTTTCTAAGAGTTCATTCATGGAATCATGCAGAGTGAGCCCTGAGA
TTGCATGGCTTCCGGGGCAGAATGTGTATGAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_f22.g1 MSMg01no168_f22.g1 CHROMAT_FILE:
MSMg01no168_f22.g1 PHD_FILE: MSMg01no168_f22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:37:32 2005
         (282 letters)



>mm_chr7_144872653_144873334
          Length = 682

 Score =  522 bits (270), Expect = e-153
 Identities = 279/282 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttcctctgagaagctgggcaaagtgactcctagggtggccctccagctgcacagggat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atttcctctgagaagctgggcaaagtgactcctagggtggccctccagctgcacagggat 260

                                                                       
Query: 61  aggtgcagggctggcagtggagcgctttttctctggagtattctccttccaacacttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggtgcagggctggcagtggagcgctttttctctggagtattctccttccaacacttatt 320

                                                                       
Query: 121 tatgccttttgagttcagttttggataaggatggatttatcttgctcatgcctcgtgtgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatgccttttgagttcagttttggataaggatggatttatcttgctcatgcctcgtgtgg 380

                                                                       
Query: 181 tgacagtatttaatgaagagacatttcaaggcatcttctgaacttgtgaatctcgagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacagtatttaatgaagagacatttcaaggcatcttctgaacttgtgaatctcgagaca 440

                                                     
Query: 241 agttttatagcttcaccaaattcactttctaaaacaagtcct 282
           ||  | ||||||||||||||||||||||||||||||||||||
Sbjct: 441 agaataatagcttcaccaaattcactttctaaaacaagtcct 482


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space:   183729
Effective search space used:   183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)