BAC Information

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BAC

Clone NameMSMg01-168K17
Chromosome7 (Build37)
Map Location 72,207,095 - 72,207,445
singlet/doubletsinglet
Overlap genenone
Upstream geneTrpm1, BB128963, Mtmr15, LOC100041582, Mphosph10, Mcee, Apba2, 5730507A09Rik, Ndnl2
Downstream geneTjp1, Gm1693, EG665234, Tarsl2, Tm2d3, LOC665241, Pcsk6, Snrpa1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168K17.T7 (MSMg01no168_k17.b1)MSMg01-168K17.TJ (MSMg01no168_k17.g1)
ACCAG365775AG365776
length1,0091,207
length of high quality
(start - end)
364 (29 - 392)370 (73 - 442)
definitionCHROMAT_FILE: MSMg01no168_k17.b1 PHD_FILE: MSMg01no168_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:04 2005CHROMAT_FILE: MSMg01no168_k17.g1 PHD_FILE: MSMg01no168_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NGGTCATTGGGCCTATAGACTCCTAAGGGAGAGGATCCGCGGAATTCAAA
GATCCGGGGCCTGCTGTGCCCTGTCCCAGGGGACACAGGACACATGTCAG
CTGGCTCATTAGTTAGTCCCCAGGGCCTTGCTACTAACTCCTGTGCCAGC
TTTGTCCCAGCTGCCAATGCATCTATCCCATCCTCACCCTGGGCAGCCAT
CTCTCCCACCCTCCCCCTGGGTAGTCAGTTCTGTCTACCTCACCTCCAGC
CACCTCCCTGTACCATGGCTGATACTGCAGGCAACCATGTCACCTTTTCA
GAAGTCCAAACACTAGGGAGAATTCTTTGCAATCTTCCAGAAACTACCAG
AGTTGCAATCAAGTAATGAACAGGTCATGTGACACCCACGATTGTTTTGG
ACAGTGACCTCTCAGCAGCTAGCTCTCTCAGTGTGACAAAAAATTTTTTT
TTCCCCCCCCCCCCCNNAAGAGGATGGAGTGAAAAAAAGAAGGGTCGAAA
TNNAGAGTTANAGTCCTCAGTACACACACACACACACACACACACACACA
CACACACACACACACACAATGTTTGAGATGAGATACACCCATAACACTGA
GTGTGATCCTCCTTTGTCTTCCCTCCTAGATTAACTTATTATTTAATTCC
CAATTCATGATGGCAAATCACAACTAANATTGCTCTGGGCTTCCACAGTC
TTCTGACAAATGTTATTTCTTGTTTTACATTAGCAGATTCACCATTACAC
ACACTCCCACACCACTGTAACAGATGCACCTCTGCTCACAGTAAGTTAGA
GCCCAATAAACCCACTTAAATGTAAAACGAGGGAGGCCTTAAGAATATGG
TATAGTGAGTATATAAAAAAAAAGAATTTTATTTTTTTATTTTTTAAAAT
AAAATTTTAAAAACCTTATTTTTTTAAAAAAGGTAACAAATCTGCATATT
TTTTAAAATCCTCTATCCACAACCGTTGGGTTTAACTTTCTCTTTTGTGG
TGTTAACCC
NNTTCTGACGTGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTTGAATCTATCTGGTCCTGGACTTAA
AAAAAATTACACTGGGAGGATTTTTATTGCAATTTCAATCTCATTTGTTA
TGGGTCTATTTAGGTTATTTAATTCTTCTTGGTTTAATTTTAATAGCTTG
TATAAATCTAGAAATTCACCCACTTCTTTTAGGTTTTCCAGCTTAAAGGA
GTACAGGTTTTTGTTTGTTTTTGTTTTTTTTTTTTAAATGTATTCAGAGT
TTACTTGGTGTTTGTAGTAACATTTCCTTATTCATTTCTGATTCTGTTAT
TTTCATGTTGCTTTTTCTTTCTTTTGGCTGGTCAGGCCAATATTTTTTCA
ATCTTGNTTATTTTCTCAAAGAACCAGTTTTTAGATTCACTGTTTTTTTT
CCCCCCCCCCCCNNNNNNATTACNTTCCTAAAAGAAAAGAGGGGGGTTNC
TTCTTATTCTCTNGTGGATTTGGATTTCTTTGTTTTTCCCAAGTTTCAAG
TTGCACCATTAATTCATTTATTTGTGATCTTTCTGAAGTTTTAATGTATG
CATGTACAGATTATGATTTCTCCTATGTACTGTTTCTAGTGTGCATTGTG
GCTTACTTGTGTTTATATTTTTATTTTTATTTATTTTCTGTATATTTCTT
ATTTCTTCTTTGATTTTTTCTCTTTATTCATTTCATTATTGAAATTGATT
AATATTATTTTTTTTTTTTCTCTTATATATTTTTATTAATTCTTTCTTTT
ATTTTTATTTTTTATTTTTTTTTTTTTTTCTTTCCTTTTCTCTTTTCTTT
TTTTCTTTCTTTTTTCTATCTTTTTTATTATTATTTTTTTTTCTTTATTC
ATTTTTTTTCTTTTTTTTTGCTCATGTTATTTTTTTTTACTACTTTATTT
TTATTTTATTTTTCAATATTCTTTTTTTTTTCTTTACCTTTTTTTTTTAT
ATTATTTTCTTCCTTTTTTATAATTTTATTTTTTTTACTTTCTTTATTTT
TATATTTTTTGCTATTTTTTCACTTTATTCTTTCTTTATTTTTTATATTA
TTTCTATTTTTTTTTACTTTTCTTTCTGTTATATATGTTTNTTTGTCTAT
TTAATATTTGTTCTTTCTTATTCTGTCTTTCNTTATTTATCTTTTCGCTT
GTACTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_k17.b1 MSMg01no168_k17.b1 CHROMAT_FILE:
MSMg01no168_k17.b1 PHD_FILE: MSMg01no168_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:04 2005
         (364 letters)



>mm_chr7_72206882_72207645
          Length = 764

 Score =  642 bits (332), Expect = 0.0
 Identities = 347/352 (98%), Gaps = 2/352 (0%)
 Strand = Plus / Plus

                                                                       
Query: 14  gaattc-aaagatccggggcctgctgtgccctgtcccaggggacacaggacacatgtcag 72
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 214 gaattcaaaagatccggggcctgctgtgccctgtcccaggggacacaggacacatgtcag 273

                                                                       
Query: 73  ctggctcattagttagtccccagggccttgctactaactcctgtgccagctttgtcccag 132
           |||| |||| | |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 274 ctgg-tcatcatttagtccccagggccttgctactaactcctgtgcaagctttgtcccag 332

                                                                       
Query: 133 ctgccaatgcatctatcccatcctcaccctgggcagccatctctcccaccctccccctgg 192
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 ctgccaatgcatctatcccatcctcaccctgggcagccatctctcccaccctccccctgg 392

                                                                       
Query: 193 gtagtcagttctgtctacctcacctccagccacctccctgtaccatggctgatactgcag 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 gtagtcagttctgtctacctcacctccagccacctccctgtaccatggctgatactgcag 452

                                                                       
Query: 253 gcaaccatgtcaccttttcagaagtccaaacactagggagaattctttgcaatcttccag 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gcaaccatgtcaccttttcagaagtccaaacactagggagaattctttgcaatcttccag 512

                                                               
Query: 313 aaactaccagagttgcaatcaagtaatgaacaggtcatgtgacacccacgat 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 aaactaccagagttgcaatcaagtaatgaacaggtcatgtgacacccacgat 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)