BAC Information

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BAC

Clone NameMSMg01-168L01
Chromosome7 (Build37)
Map Location 65,743,105 - 65,743,403
singlet/doubletsinglet
Overlap genenone
Upstream geneGabra5, Gabrb3, EG668807, LOC434189
Downstream geneAtp10a, LOC621446, LOC668811, LOC668813, LOC668815, EG668818, Ube3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168L01.T7 (MSMg01no168_l01.b1)MSMg01-168L01.TJ (MSMg01no168_l01.g1)
ACCAG365790AG365791
length718912
length of high quality
(start - end)
303 (44 - 346)109 (133 - 241)
definitionCHROMAT_FILE: MSMg01no168_l01.b1 PHD_FILE: MSMg01no168_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:06 2005CHROMAT_FILE: MSMg01no168_l01.g1 PHD_FILE: MSMg01no168_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTAATTCAATTTGAGGACATTTGGACACAGAGAGACACTGGGGGTGTG
CATGCACACAGAAAGGGATACTAGGGAGACAGCAGAAAGATGTGTGACTG
AAAGCCAACAAGGGACATTTCATTTATAGATGATGTCGATGATGATGACC
AACAATGATAAAAATATACTGGTACCTCACTCTGGGTTTCCAGATTTTTG
GAACTCCCAACTCATGAATTTCTGTTGTTTAAGACACCCAGCATGTGGTA
CTTCATTATGACTGTCCCAGCACACTGATGTGTTATTATCCTACTACTAA
AGGGTTCTTTTTTTCCCCCTCCCCCCCCCCCTATAATCCTCAAATAGTCA
GTTGGGATCTTTCTCCAGAATGCAAACAAACCTTACTGGGATTGCGGTCC
CATTTTTCTTTCCTCTCTATTATTATTGCGTACTCGTCCTCTTTTTTCTA
TGCTAATACCTCCTCCCAACCGTATCCTCTTGCCATATTTCCCCCCCTTT
CCCCTCGCTTAACTAGAACTCTTTGCGACGCTTGCACCAAAACACACCAT
TCTGTTTCCCCACCACTTTTCCCTCACAATTTTGCATCGCCCCCTGCTAA
TTGATCAATCTGCGAACACTCTTGTTCTCCGATTTATACCACTTATTATC
TTATCTCTCCTTCTCTTC
GGACCCTCCCTTTCATTTCATAACTATCACCCTCGCATTTTTTTCTTNNN
NNAACGCGAGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGGGAGTGTACTGGCATG
CCCCATTTCTCAGGAGGAAGAGGCAAAAGCAGGAAAATCCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGCGTGTGCG
ATAAAAAAACCAACACCCTTTGCCCAGGGAAGAATACCCACCCCAAAACA
CCACAAAAACATCAATTTTTCCCTCTTCTCGGCCACCACTTTCCCCTGCA
TATGTAATGCCCCTTTACTTATATACAAGCATTTTTTTTATCTTTTCTTT
ACCTTTTCTCCAACTACCCCCTCCCTATTTATGTTTTTCCCCCCCCCCCC
CCCCCTCTTCTTTAGTTTTTATATAATTTTGTACTTTTTCTTCCCCCCCC
AACAAAAAAAAAAAATAAAAATGGCCTCTTAGGTTTCATATTTCCTTTTT
CCCGCCATTTTTCCCCCCGTTACAATAAATTGACACCATTCGCAAACAAC
CATACCCATCCTAATTTTATGTTAACAAAAATTTACGCAGCCCCCCCCAC
AATTATTAACCAATTCTTAATACATATAATACCCCTCGTGGCTCCCCCCG
CTTTTTAGAAAATAAATCCCCCGCTCACTATTGCCCAAACCTTTAACCCG
TAATAAATCTTTGTTCAGGCTCGACCCCCCCTCCGCGCCCTTAATTAATA
AAATAATAAACTCCACTCGCCGCGACTCATAAGCTTATACCATTAACCAC
CCGCCCACAATATACACTATAACCTCCCCTATNTAATATATTACACTATA
TAACACACAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_l01.b1 MSMg01no168_l01.b1 CHROMAT_FILE:
MSMg01no168_l01.b1 PHD_FILE: MSMg01no168_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:06 2005
         (303 letters)



>mm_chr7_65742901_65743603
          Length = 703

 Score =  555 bits (287), Expect = e-162
 Identities = 296/299 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctaattcaatttgaggacatttggacacagagagacactgggggtgtgcatgcac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctaattcaatttgaggacatttggacacagagagacactgggggtgtgcatgcac 264

                                                                       
Query: 65  acagaaagggatactagggagacagcagaaagatgtgtgactgaaagccaacaagggaca 124
           ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 265 acagaaagggacactagggagacagtagaaagatgtgtgactgaaagccaacaagggaca 324

                                                                       
Query: 125 tttcatttatagatgatgtcgatgatgatgaccaacaatgataaaaatatactggtacct 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 tttcatttatagatgatgtcgatgatgatgaccaacaatgataaaaatatactgatacct 384

                                                                       
Query: 185 cactctgggtttccagatttttggaactcccaactcatgaatttctgttgtttaagacac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cactctgggtttccagatttttggaactcccaactcatgaatttctgttgtttaagacac 444

                                                                      
Query: 245 ccagcatgtggtacttcattatgactgtcccagcacactgatgtgttattatcctacta 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ccagcatgtggtacttcattatgactgtcccagcacactgatgtgttattatcctacta 503


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 303
Length of database: 703
Length adjustment: 9
Effective length of query: 294
Effective length of database: 694
Effective search space:   204036
Effective search space used:   204036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)