BAC Information

Click to search

BAC

Clone NameMSMg01-168O03
Chromosome7 (Build37)
Map Location 134,324,222 - 134,401,653
singlet/doubletdoublet
Overlap geneCd2bp2, Tbc1d10b, Mylpf, Sept1, LOC100043580, Zfp553, Zfp771, 2410015N17Rik
Upstream geneXpo6, Sbk1, LOC100043495, Lat, 2210013K02Rik, Nfatc2ip, Cd19, Rabep2, Atp2a1, Sh2b1, Tufm, Atxn2l, Eif3s8, Cln3, Apob48r, Il27, Nupr1, Ccdc101, Sult1a1, LOC629029, Giyd2, Bola2, Coro1a, Snrp1c-ps1, LOC100043044, Mapk3, Gdpd3, Ypel3, Tbx6, Ppp4c, Aldoa, 1500016O10Rik, 4930451I11Rik, Doc2a, Ccdc95, Hirip3, 1110032O16Rik, Kctd13, A830007L07Rik, Sez6l2, D830044I16Rik, Cdipt, Mvp, 2900092E17Rik, Maz, Kif22, 1810010M01Rik, AI467606, Qprt, Spn
Downstream geneSephs2, Itgal, Zfp768, LOC100043097, LOC100043589, 6430604K15Rik, 9130019O22Rik, E430018J23Rik, LOC100043590, Zfp764, Zfp688, Zfp689, Prr14, Fbs1, 1700008J07Rik, LOC100043597, D030022P06Rik, Phkg2, Gm166, Rnf40, 1700120K04Rik, Zfp629, Bcl7c, Ctf1, Ctf2, Fbxl19, Tmem142c, Setd1a, Hsd3b7, Stx1b2, Stx4a, Zfp668, Zfp646, BC039632, Vkorc1, Bckdk, Myst1, Prss8, Prss36, Fus, Pycard, Trim72, LOC436010, EG668675, Itgam, Itgax, Itgad, Cox6a2, LOC100043133, Armc5, Tgfb1i1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168O03.T7 (MSMg01no168_o03.b1)MSMg01-168O03.TJ (MSMg01no168_o03.g1)
ACCAG365930AG365931
length9661,111
length of high quality
(start - end)		350 (495 - 844)377 (72 - 448)
definitionCHROMAT_FILE: MSMg01no168_o03.b1 PHD_FILE: MSMg01no168_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:24 2005CHROMAT_FILE: MSMg01no168_o03.g1 PHD_FILE: MSMg01no168_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:38:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,401,304 - 134,401,653)(134,324,222 - 134,324,595)
sequence
NNNGGGGCATTGGCGNTATAGATACTATGGCAGAGGATCCGCGGAATTAG
AATTATCTTTCCAACATTGAGGGAGGATTTTGTATCTGTTTTTGTTCTCT
GTATCCTCTAAGTATCTGGCCCATCATAGGCATGATGGAGAAGATGGAAC
TGTGGAAGGTAGGGCAAGAGGCAAATCCAGGTTGATAAGACTGGAGTTAG
GTGATAGAGTTCAGACAGAAAGCCACATCTAACCTGAGAAGCAGAAAGAT
ATCTGGGCCTGCGGGGCAGATTGGACGCCTGAGAGAATGGATTAGAGCAG
GCTAGTGAACAGGCTGGTGTGGACCTAAATATGGGCGGTCATTGTGGGAC
GAAGGGTAGAGGGCATACAAGATGCATCTGAGGGTGGTCCATTTTTTGTT
TACAGATGGATCAGCATCGGTTGTGTTCCAGGTCATCTGGAAATTTTTTT
TCCCCCCCCCCCAGANTGNCTCCATTCCTGAAAAAAGAAGAGTGATAGCA
CAATTTTAAGTGATCTAGAACTGTGACAAGGATTAAGGGGAAATCAAGTC
AAATGTGGTGGTATGTGATGTGACCCCAGGGCTTGAGAGGCAGAGGCTGG
GGGATTACATGTTCATCCTTGGCCACATAGAGACTCTGAAACCTGAGTTA
TGTAAGAGCCTGTCTTGGGATTGGAAGGGGAGAATAACACAAGGAGATGA
GAAAGTAAGTTTCTGAGATGGGAACCTCTGAGTTGAAACCTAAGTATTAA
GAACGGGAAATCTAGGAGGATTGGGGCGGGGGTGTTACTCATAGTAGAAG
GAACAGTGACCACAAACAGGGGAGGTGATCAGGCTTTGTGTAGGAGAGGG
ATGGGTGGGGGAGGTAACAGGAAAGTGAATGCCCGCACTGAATCGGGTTG
GGGGTTGGTTTGAGAGGAAAACACTTATGTCTCATGAAAAATAATTTGGG
CTCTCAAAGGGTTTTA

NNNCCCATCATGGTAGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTCCTGAAGTTCTGAGTTCTTCTCTACA
GAGTCACACCAGGTCAGGCCAAGAACCAACTTATAAATGTACTAGCAAGA
GAGAACCGAGGAAATGGAAGGAGAAAGGATGGGAGACACATCCTAGAAGA
TGCTCACTAGGCCAAATGCTTTCATCTCTGGTCTAAACATCGAGTTAGTG
CCAGCCCAATGCAAGAACCACACCCCAAGCCAGCAAAACCACAAAAGTGT
CATTTGTAATTTAGCACCCACAGGAAACAGCTGGTGACAGAGTTGACATA
AACAAAAATACACACATTCACAGATACACACCCAAGCCTGAGGAAGCATT
CTCAGAGTCACAGATGCACACCCAAGCCTGAGGAAGCACTCTCAGGAGTT
TTTTTTTCCCCCCCCCCCCTCCAGTTTCCTGACACTGGAAACAGAAGGGA
GACTGGTGTGAGTTATCAAGTCAAAAACGAAGAAACTGGCTGTGTGGTGG
TGGTGCATGCCTTTAATCCCAACTCCAGAGAGGAAGAGAGCTCTGTGAGT
TCAAGGCCAGTCTGGTCTACTGAGCCAGTTCCAGGACAGTGAGGGCTACA
GAGAAATCCTGTGTCAGGAAAAAAAAGGGGGGGGGGGTGAAGAGGAGGAG
GANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTNNTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNT
TTTTTTTTTTTTTTTTTTTATATTTTTTTTTTTTTTTTTTTATTTTTTTT
TTTTTATNNTTTTTTTTTNATTTTTAATTTAATATANATATAATAATTTA
TATATTTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_o03.b1 MSMg01no168_o03.b1 CHROMAT_FILE:
MSMg01no168_o03.b1 PHD_FILE: MSMg01no168_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:24 2005
         (350 letters)



>mm_chr7_134401104_134401853
          Length = 750

 Score =  661 bits (342), Expect = 0.0
 Identities = 348/350 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atagcacaattttaagtgatctagaactgtgacaaggattaaggggaaatcaagtcaaat 60
           |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 550 atagcacaattttaagtggtctagaactgtgacaaggattaaggggaaattaagtcaaat 491

                                                                       
Query: 61  gtggtggtatgtgatgtgaccccagggcttgagaggcagaggctgggggattacatgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 gtggtggtatgtgatgtgaccccagggcttgagaggcagaggctgggggattacatgttc 431

                                                                       
Query: 121 atccttggccacatagagactctgaaacctgagttatgtaagagcctgtcttgggattgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atccttggccacatagagactctgaaacctgagttatgtaagagcctgtcttgggattgg 371

                                                                       
Query: 181 aaggggagaataacacaaggagatgagaaagtaagtttctgagatgggaacctctgagtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aaggggagaataacacaaggagatgagaaagtaagtttctgagatgggaacctctgagtt 311

                                                                       
Query: 241 gaaacctaagtattaagaacgggaaatctaggaggattggggcgggggtgttactcatag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gaaacctaagtattaagaacgggaaatctaggaggattggggcgggggtgttactcatag 251

                                                             
Query: 301 tagaaggaacagtgaccacaaacaggggaggtgatcaggctttgtgtagg 350
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tagaaggaacagtgaccacaaacaggggaggtgatcaggctttgtgtagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 350
Length of database: 750
Length adjustment: 9
Effective length of query: 341
Effective length of database: 741
Effective search space:   252681
Effective search space used:   252681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no168_o03.g1 MSMg01no168_o03.g1 CHROMAT_FILE:
MSMg01no168_o03.g1 PHD_FILE: MSMg01no168_o03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:38:24 2005
         (377 letters)



>mm_chr7_134324022_134324798
          Length = 777

 Score =  692 bits (358), Expect = 0.0
 Identities = 370/374 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcctgaagttctgagttcttctctacagagtcacaccaggtcaggccaagaaccaact 60
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 201 attcctgaagttctgagttcttctctacagagtcacagcagatcaggccaagaaccaact 260

                                                                       
Query: 61  tataaatgtactagcaagagagaaccgaggaaatggaaggagaaaggatgggagacacat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tataaatgtactagcaagagagaaccgaggaaatggaaggagaaaggatgggagacacat 320

                                                                       
Query: 121 cctagaagatgctcactaggccaaatgctttcatctctggtctaaacatcgagttagtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctagaagatgctcactaggccaaatgctttcatctctggtctaaacatcgagttagtgc 380

                                                                       
Query: 181 cagcccaatgcaagaaccacaccccaagccagcaaaaccacaaaagtgtcatttgtaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagcccaatgcaagaaccacaccccaagccagcaaaaccacaaaagtgtcatttgtaatt 440

                                                                       
Query: 241 tagcacccacaggaaacagctggtgacagagttgacataaacaaaaatacacacattcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tagcacccacaggaaacagctggtgacagagttgacataaacaaaaatacacacattcac 500

                                                                       
Query: 301 agatacacacccaagcctgaggaagcattctcagagtcacagatgcacacccaagcctga 360
           ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 501 agatacacacccaagcctgagaaagcactctcagagtcacagatgcacacccaagcctga 560

                         
Query: 361 ggaagcactctcag 374
           ||||||||||||||
Sbjct: 561 ggaagcactctcag 574


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 377
Length of database: 777
Length adjustment: 9
Effective length of query: 368
Effective length of database: 768
Effective search space:   282624
Effective search space used:   282624
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |