BAC Information

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BAC

Clone NameMSMg01-169J11
Chromosome7 (Build37)
Map Location 152,345,040 - 152,509,500
singlet/doubletdoublet
Overlap gene1810010D01Rik, LOC100040049, Tpcn2, Mrgprf, Mrgprd
Upstream geneShank2, Cttn, Ppfia1, Fadd, Tmem16a, LOC669079, LOC677315, Fgf3, Fgf4, Fgf15, Oraov1, Ccnd1
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-169J11.T7 (MSMg01no169_j11.b1)MSMg01-169J11.TJ (MSMg01no169_j11.g1)
ACCAG366418AG366419
length697711
length of high quality
(start - end)
284 (10 - 293)236 (121 - 356)
definitionCHROMAT_FILE: MSMg01no169_j11.b1 PHD_FILE: MSMg01no169_j11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:19 2005CHROMAT_FILE: MSMg01no169_j11.g1 PHD_FILE: MSMg01no169_j11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:19 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(152,509,233 - 152,509,500)(152,345,040 - 152,345,273)
sequence
GACTCCTATAGGGAGAGGATCCGCGGAATTCCCTTAGGAAAGGAGGGTGG
TAAGGGTTAGAGACTTCTCTCCCTTTCTCTTGTACCTCCTCTTGGATGCA
TGTAACCCCACTTCACTTGTCATGGTTTAGGGAGGTGCTAGTAAGAGAAG
GGTAGGTTAAGTAAGGGGAGCACTTCATCTACAGAACCTCTGGAAATGGT
CATCCATGCTGGGGAGAAACTTATCAGTGACATGTCTGTTTTAGGGTCAC
CTACATTTCTGTAAGTAATGCTGAACTACATCTCTATAAGTATCTTCTGG
ACCACACTTCTGTGTGTAAATTGGTTCATCAGATTGTTANNGTCCCCGGA
TCGNNNCCCTGGTCTTTATTGGTGCCTTATTTGGTATGCGTCCCCCCCCA
AAAAAAAAAAAGTCCCTCGGGGTGGTGCAGGTGCGGAGATATGTGTATCA
TAGAAACTACTTTGCGCACCACATGACGTTTCCTGAATATCCCCAGGTTC
CTATATGTTTAGCTGTTTAACTTTAACTGTCTTCTTTGACACATCCCTAT
CCTCCCTTGTGTATGATCGGTGCCTCTATGAACGAATGCAGTTACTTTTG
ATATTTTGCCCCCCCCGCGATTGTCCCCCCTGTTTATTGTTTATATAATG
TTCTTTTCCGTCAGTATTTTTTCCCTTACCCCCCTATATTCTTACTG
ACGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGCTGCCCTGGCAAGAAATGGGGCTTC
TCACGGTGTCACTACCCCTGTGCACAAAGAGAGAGGCAGGGAGGAAGTCA
GTGGAGCACACCATGGTGTGAGGGGGTAGGATACAAGCCTGATCCAATGC
ATTTTGCCTAAATCCACTTTGAGTCATGTCTCCTGTCTCTGACCAACATT
ACTCTTAGGTATGGAGAAGTTAACTCAAATCCCAGTGGCCTCTGCCTGGC
ATGCCCATCAGGGCTGCCACTGGTCTTCCACATGGCAGCCGGCTGTGCCT
CTCTTTTTTTCTGCCCCCACCCCGGGTGTAATTTATGGTAGGAAGCTCTT
AACAGCATGGCCGCTTTGAGAGAGCCTGTGACAATAGGCATAAAGCCGGC
ATTTAACCAGTGTGAATGGAGCCTAGATTTACTGTCTGGGCCAGACGGGA
TTTTTGTCCACAAGTCATCTCGGAGTACATTGACCACTAAAGGCTTCAAC
AGAAGACGAGGACCAAACAAAGGAAGTCAATTTTAAAAGGAACTTTGTCA
AGGAGGTTTAGATGTCCACCAGATAGAAAAGGCGCGGCTGTCCTCTCCGG
TGACAGCCGATCTGCCCAGTTGCAGCAGATCAGATGGAGATGCTAATGAT
GTCGTTTGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no169_j11.b1 MSMg01no169_j11.b1 CHROMAT_FILE:
MSMg01no169_j11.b1 PHD_FILE: MSMg01no169_j11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:19 2005
         (284 letters)



>mm_chr7_152509112_152509795
          Length = 684

 Score =  518 bits (268), Expect = e-151
 Identities = 268/268 (100%)
 Strand = Plus / Minus

                                                                       
Query: 16  ggaattcccttaggaaaggagggtggtaagggttagagacttctctccctttctcttgta 75
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 ggaattcccttaggaaaggagggtggtaagggttagagacttctctccctttctcttgta 330

                                                                       
Query: 76  cctcctcttggatgcatgtaaccccacttcacttgtcatggtttagggaggtgctagtaa 135
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 cctcctcttggatgcatgtaaccccacttcacttgtcatggtttagggaggtgctagtaa 270

                                                                       
Query: 136 gagaagggtaggttaagtaaggggagcacttcatctacagaacctctggaaatggtcatc 195
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gagaagggtaggttaagtaaggggagcacttcatctacagaacctctggaaatggtcatc 210

                                                                       
Query: 196 catgctggggagaaacttatcagtgacatgtctgttttagggtcacctacatttctgtaa 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 catgctggggagaaacttatcagtgacatgtctgttttagggtcacctacatttctgtaa 150

                                       
Query: 256 gtaatgctgaactacatctctataagta 283
           ||||||||||||||||||||||||||||
Sbjct: 149 gtaatgctgaactacatctctataagta 122


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no169_j11.g1 MSMg01no169_j11.g1 CHROMAT_FILE:
MSMg01no169_j11.g1 PHD_FILE: MSMg01no169_j11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:19 2005
         (236 letters)



>mm_chr7_152344840_152345475
          Length = 636

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcacaaagagagaggcagggaggaagtcagtggagcacaccatggtgtgagggggtagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgcacaaagagagaggcagggaggaagtcagtggagcacaccatggtgtgagggggtagg 260

                                                                       
Query: 61  atacaagcctgatccaatgcattttgcctaaatccactttgagtcatgtctcctgtctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atacaagcctgatccaatgcattttgcctaaatccactttgagtcatgtctcctgtctct 320

                                                                       
Query: 121 gaccaacattactcttaggtatggagaagttaactcaaatcccagtggcctctgcctggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaccaacattactcttaggtatggagaagttaactcaaatcccagtggcctctgcctggc 380

                                                                 
Query: 181 atgcccatcagggctgccactggtcttccacatggcagccggctgtgcctctct 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atgcccatcagggctgccactggtcttccacatggcagccggctgtgcctctct 434


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 636
Length adjustment: 9
Effective length of query: 227
Effective length of database: 627
Effective search space:   142329
Effective search space used:   142329
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)