BAC Information

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BAC

Clone NameMSMg01-170A21
Chromosome7 (Build37)
Map Location 149,278,339 - 149,363,508
singlet/doubletdoublet
Overlap geneLOC100039728, EG668763, LOC100043616, EG665295, LOC100043617, Krtap5-2
Upstream geneSigirr, Trp53i5, Ptdss2, Rnh1, LOC546015, Hras1, Lrrc56, 1600016N20Rik, Rassf7, AA673488, Irf7, Mucdhl, Sct, Drd4, Deaf1, Tmem80, Eps8l2, B230206H07Rik, Taldo1, LOC100043585, Pddc1, Cend1, Slc25a22, Lrdd, Rplp2, Pnpla2, Efcab4a, Cd151, Polr2l, Tspan4, Chid1, Ap2a2, Muc6, LOC100039649, Muc2, Muc5ac, Muc5b, Tollip, EG623757, Brsk2, 2700078K21Rik, Dusp8
Downstream geneLOC100039757, LOC100039767, EG665305, Krtap5-5, EG640223, LOC672428, LOC100039800, LOC100043627, LOC100043629, ENSMUSG00000038442, Krtap5-1, Krtap5-4, LOC270015, 6330512M04Rik, Ctsd, Syt8, Tnni2, Lsp1, ENSMUSG00000043795, Tnnt3, Mrpl23, Nctc1, H19, Igf2, Igf2as, Ins2, EG640264, EG624121, Th, Ascl2, Tspan32, R74862, Cd81, Tssc4, Trpm5, Kcnq1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170A21.T7 (MSMg01no170_a21.b1)MSMg01-170A21.TJ (MSMg01no170_a21.g1)
ACCAG366745AG366746
length773754
length of high quality
(start - end)
207 (48 - 254)290 (74 - 363)
definitionCHROMAT_FILE: MSMg01no170_a21.b1 PHD_FILE: MSMg01no170_a21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:54 2005CHROMAT_FILE: MSMg01no170_a21.g1 PHD_FILE: MSMg01no170_a21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:39:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(149,363,306 - 149,363,508)(149,278,339 - 149,278,628)
sequence
ACTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACTAATAATTTCTAAGCCTTTTCAGAAAACAGAATAGGAAGGG
GCACTTCCAGACTCATCCTCTGAACATTGAATTCCAAAGAGTTGCAGAAG
GAAGAAGGGAAATGCACTCTTGTCTTTGGAGCATAGGGAATGGAGATGTT
GTGCCCTGAGTCCACGGGAAACCCAGATGAGCCCAAGAATTTCGAAGTCC
TCTGCAACTCGAAAAAGAGCCTTTTATTGTTTCAAGTTCGAACTCAGATC
GCCCCCCTCGCACTCACCTTGTGAATGCTTTTTTTCAACCCTGAGTCCAG
AAAACACCGGGNNNATTTAGATGAAATATCCAGACGACCCCCTTTTGTTT
TTTTTTTTTTTGTTGTNTTGNNNNGCCCCCCAAAAAAAAAAAAAAAAAAT
CTCGGGGGGGGGGGGGTCTCCCTCTCCTTCCTTCCCCCCCCCCCTCCTTC
CCCCTTCCTCTCTCCCCCCCCTTACTTCTCTTTCTCCCCCCCCCCCCCCT
CCCCCTCTTCCCCTCTCGTCCTTTCTCCGTCCTTCCTCCTCCTTCCCCTC
TTTTCCCCTCCGTCCCTCTCTCCTTCCCCTCCCCCTCTTCTTTACGCCTC
CTCCAGCCTCCCTTCTACATCCCTAACACCCTCAGCCTCCTTACCGTACG
CCCCTTCCCTTTCGTTTCGCTTGGCCCATCCTCCCCCCACTCCCTCCTCT
TCCCCCTCCCACCCTCCCCCCCC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXATTGGGGCTTGAAATAGATATGTAGGG
CCAGTTTTGAGAAGGTCAGCAGGGCCCAGACAGACCATGCAATATCTTAG
CAAAGCAACATACATTCCCAGTTCTTCCCAGGGAGAACAGCTATCAGCCT
GTTCTACAGGAGCCTTGAAGTGGGTTGGGGAGGTGGTCAAGACCCCTTAT
GCAGAGGCTGTAGGCCTTCATCAAAGGATTTTGAGCCAGGAGACAAGCAA
TCCTAAATTCAAAGTTAAGAGGAGCCTTTCCCAGGCCACACCCCTCAGGG
AGGTCCCAGGCAACCTTTTTTTGTTGACCCCCCCCCCCACAGCTCAGGCC
TTGTGGCACTGTTCCCTGGGCACAGGAACACTCCACTAAGAACATTCNCA
GATGCGTGCCTTATTGACAATCCATCTTGTCCCTGAGTGCAATTACACAT
GTGTCCCTCTGCACATACAGAAGACATTACAGCCTCCTGGAGTGCATGAC
TGAAATACACAGCTGCTAACAAATCCTTTCTGTACACCAAAGCCCTCGGT
GCCCACATACCAAGTGCCAGTCCATTGCCTTTCACCCTGGGTTTCCCACA
CAACATGTTCTGGTTCCCCCAGTCCTTACGTGCACTCTTATATATCCCGA
TACCTCAATGGGATTCCTTCCTATATCTACTTTTGGCCCGTGTTCTAACG
GCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_a21.b1 MSMg01no170_a21.b1 CHROMAT_FILE:
MSMg01no170_a21.b1 PHD_FILE: MSMg01no170_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:54 2005
         (207 letters)



>mm_chr7_149363102_149363708
          Length = 607

 Score =  393 bits (203), Expect = e-114
 Identities = 203/203 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcactaataatttctaagccttttcagaaaacagaataggaaggggcacttccaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 407 gaattcactaataatttctaagccttttcagaaaacagaataggaaggggcacttccaga 348

                                                                       
Query: 65  ctcatcctctgaacattgaattccaaagagttgcagaaggaagaagggaaatgcactctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 347 ctcatcctctgaacattgaattccaaagagttgcagaaggaagaagggaaatgcactctt 288

                                                                       
Query: 125 gtctttggagcatagggaatggagatgttgtgccctgagtccacgggaaacccagatgag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 287 gtctttggagcatagggaatggagatgttgtgccctgagtccacgggaaacccagatgag 228

                                  
Query: 185 cccaagaatttcgaagtcctctg 207
           |||||||||||||||||||||||
Sbjct: 227 cccaagaatttcgaagtcctctg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 607
Length adjustment: 9
Effective length of query: 198
Effective length of database: 598
Effective search space:   118404
Effective search space used:   118404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no170_a21.g1 MSMg01no170_a21.g1 CHROMAT_FILE:
MSMg01no170_a21.g1 PHD_FILE: MSMg01no170_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:54 2005
         (290 letters)



>mm_chr7_149278139_149278828
          Length = 690

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   attggggcttgaaatagatatgtagggccagttttgagaaggtcagcagggcccagacag 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 attggggcttgaaatagatatgtagggccagttttgagaaggtcagcagggcacagacag 260

                                                                       
Query: 61  accatgcaatatcttagcaaagcaacatacattcccagttcttcccagggagaacagcta 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatgtaatatcttagcaaagcaacatacattcccagttcttcccagggagaacagcta 320

                                                                       
Query: 121 tcagcctgttctacaggagccttgaagtgggttggggaggtggtcaagaccccttatgca 180
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 321 tcagcctgttctacaggagccttgaagtgggttggggaagtggtcaagaccccttatgca 380

                                                                       
Query: 181 gaggctgtaggccttcatcaaaggattttgagccaggagacaagcaatcctaaattcaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaggctgtaggccttcatcaaaggattttgagccaggagacaagcaatcctaaattcaaa 440

                                                             
Query: 241 gttaagaggagcctttcccaggccacacccctcagggaggtcccaggcaa 290
           |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 gttaagaggagcctttcctaggccacacccctcagggaggtcccaggcaa 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)