BAC Information

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BAC

Clone NameMSMg01-170C02
Chromosome7 (Build37)
Map Location 123,234,748 - 123,235,050
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668472, Sox6, LOC100042779, 1110006G14Rik, EG668479, LOC100043313
Downstream gene1110004F10Rik, Plekha7, Rps13, Pik3c2a, LOC100042798, Nucb2, LOC100043320, EG668484, LOC668485, LOC546993, LOC100043330
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170C02.T7 (MSMg01no170_c02.b1)MSMg01-170C02.TJ (MSMg01no170_c02.g1)
ACCAG366797AG366798
length713744
length of high quality
(start - end)
317 (46 - 362)---
definitionCHROMAT_FILE: MSMg01no170_c02.b1 PHD_FILE: MSMg01no170_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:00 2005CHROMAT_FILE: MSMg01no170_c02.g1 PHD_FILE: MSMg01no170_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATCGAGGTAACAAAGTAGGATGATTATAATTCACTTCAAATAGA
TTTGAAAAATTGTAATAAGCACAATTTAGAACTCTTAATGTTACTGGCAA
AATAAGATGGCCCAGTAGCTACTTAAAGATAGCTAAGTGACTCTAAGATG
AAGAGGATTATTATTAAGGTTAGTAAATATTAAACAATTTTAACTTTAGT
AATAGATAAAAGTCCAGGAAATTTTAATGGGTTAATAATGTGCTTTTTAT
TCACCAGATTTGTGGCACATCTGGATGGCTATGTGTTCAAGTTATCATAA
AACATCATGGAGCATTTTCTATTCTCCCCCCCCCCCCCTGTATCATTTGA
ACAGACTTGATTCAGTTCATGTTCACAAAGCTAGATGAGAAGATGAAACT
GTATAGTAGTAGCAATATATGATGACACAGAGACTTAGTAATACTCTCCC
TTGTTAACAAGAAGTCATCGATGGAGCTATGAAATACCTTCTCTAGTACA
AGACCATTCCAGCTTCACTTTTTGTTTGTTTTCTAACACAGTGCCACAGG
ATGGTTAGTGAATGTCTTAAGTTTGTACTACCTTAGATATTCTCTGCTAA
TCCTTAAATTTTACCAAACACTTTCAGTGGGTACATAAGGAACATATTTT
CTGCATTCAAGCA
NAAGTGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTTCATCAGAAATATGCTG
AACATGTTCAACAGAAATATCACACTAGGTGAATTAGTAAAAGAAGGAGG
CAGTGGTTTGTTCCTACCAAGGTTGGGAGTGTTTAACTGTTGGAGGCTGG
GCCCTTGAATCCCTGAATGGCCCACCAGTTCTTACCCAGGAATTCTCATG
GTTGCCACACCCTTTCAGTTAACCCTGGAAAGCAACCAAAAGGTAGTTTC
CAAACCCGGCGAAAGCCCGGGCGTTTTTTAAAACCTTTTTTCAAGGCCCC
CGGGGGGGGCCCCTTTTAGGGGCCCTCCAAAAAATTATAAAGGGGGGTCC
CCCCACCCCCCCCCGTTTTTTTCTTTTTTGGGCCCCCCCCCCCCACCGCC
GCCNTGGGGGCCCCCCCTGGGGGGTTTTATTAGGGGGGGGGGGCGCCCCC
CCNACACACATGCGCCCCACATTTTATGGACTTCCCCCCCTTGGAACACC
CCCGCGGGGGGGTTCTTTTTTTGTTTATAAAAAAAGGGCTCGGTGCTATT
TCTTTTTTCCCCACACAAAAATGGTGAAAACAATGTGTGGTAACAGAGGG
GGGGGCGTTCCAAATAAAGAAAAAAAAACGTGGCGCGGGCGCTCTTCTTT
TTCTCCTCTTTTCGCGGCGCCCGCGATATATTCTTTTTTGTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_c02.b1 MSMg01no170_c02.b1 CHROMAT_FILE:
MSMg01no170_c02.b1 PHD_FILE: MSMg01no170_c02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:00 2005
         (317 letters)



>mm_chr7_123234617_123235333
          Length = 717

 Score =  553 bits (286), Expect = e-162
 Identities = 302/314 (96%), Gaps = 11/314 (3%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattccatcgaggtaacaaagtaggatgattataattcacttcaaatagatttgaaaa 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ggaattccatcgaggtaacaaagtaggatgattataattcacttcaaatagatttgaaaa 375

                                                                       
Query: 64  attgtaataagcacaatttagaactcttaatgttactggcaaaataagatggcccagtag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 attgtaataagcacaatttagaactcttaatgttactggcaaaataagatggcccagtag 315

                                                                       
Query: 124 ctacttaaagatagctaagtgactctaagatgaagaggattattattaaggttagtaaat 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 ctacttaaagatagctaagtgactctaagatgaagaggattattattaaggttagtaaat 255

                                                                       
Query: 184 attaaacaattttaactttagtaatagataaaagtccaggaaattttaatgggttaataa 243
           |||||| |||||||||||||||||||||||||||||||||||||||           |||
Sbjct: 254 attaaataattttaactttagtaatagataaaagtccaggaaattt-----------taa 206

                                                                       
Query: 244 tgtgctttttattcaccagatttgtggcacatctggatggctatgtgttcaagttatcat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 tgtgctttttattcaccagatttgtggcacatctggatggctatgtgttcaagttatcat 146

                         
Query: 304 aaaacatcatggag 317
           ||||||||||||||
Sbjct: 145 aaaacatcatggag 132


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)