BAC Information

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BAC

Clone NameMSMg01-170F07
Chromosome7 (Build37)
Map Location 110,831,931 - 111,000,462
singlet/doubletdoublet
Overlap geneOlfr625-ps1, Olfr261-ps1, Olfr260-ps1, Olfr627, Olfr1526-ps1, Olfr629, Olfr630, Olfr69, Olfr68, Olfr67, Hbb-b1, EG436003, Hbb-bh1, Hbb-y
Upstream geneTrim68, Olfr557, Olfr558, Olfr33, Olfr559, Olfr78, Olfr560, Olfr561, Olfr562-ps1, Olfr563-ps1, Olfr564, Olfr565-ps1, Olfr566, GA_x5J8B7W5P47-379997-380552, Olfr567-ps1, Olfr568, Olfr569, Olfr570, Olfr571, Olfr572, Olfr573-ps1, Olfr574, Olfr575, Olfr576, Olfr577, Olfr578, Olfr1527-ps1, Olfr579-ps1, Olfr580-ps1, Olfr581-ps1, Olfr582, Olfr583, Olfr584, Olfr585, Olfr586, Olfr587-ps1, Olfr588-ps1, Olfr589, Olfr590-ps1, Olfr591, Olfr592, Olfr593, Olfr594, Olfr595-ps1, Usp17, Dub2a, LOC100041187, Olfr597, GA_x5J8B7TU1BB-380-666, Olfr598, Olfr599, Olfr600, Olfr601, Olfr602-ps1, Olfr604, Olfr596-ps1, Dub2, Olfr605, Olfr606, EG546989, Olfr608, Olfr609, Olfr610, Olfr611, EG545985, Olfr614, Olfr615, Olfr616, LOC100042167, Olfr617, Olfr618, Olfr619, Olfr620, LOC667639, Olfr622, Olfr623, Olfr624
Downstream geneOlfr66, Olfr64, Olfr65, Olfr631, Olfr632, Olfr633, Olfr634-ps1, LOC233614, Olfr635, Olfr636-ps1, Olfr637-ps1, Olfr638, Olfr639, Olfr640, Olfr641, Olfr642, Olfr643, Olfr644, Olfr645, Olfr646, 4931431F19Rik, Ubqln3, Ubqlnl, E030002O03Rik, Olfr647-ps1, Olfr648, Olfr649, Olfr650-ps1, Trim6, LOC667497, EG667823, Trim12, Trim34, 9230105E10Rik, A530023O14Rik, EG434219, LOC100041595, Trim30, AI451617, LOC672495, LOC625305, EG625321, Olfr651, Olfr652, Olfr653, Olfr654, Olfr655, Olfr656, Olfr657, Olfr658, LOC667882, Olfr659, GA_x5J8B7W3SPQ-80592-80214, Olfr661, LOC625495, Olfr662-ps1, Olfr663, Olfr664, EG625530, LOC100042613, LOC233637, Dub1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170F07.T7 (MSMg01no170_f07.b1)MSMg01-170F07.TJ (MSMg01no170_f07.g1)
ACCAG366933AG366934
length738721
length of high quality
(start - end)		315 (47 - 361)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no170_f07.b1 PHD_FILE: MSMg01no170_f07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:15 2005CHROMAT_FILE: MSMg01no170_f07.g1 PHD_FILE: MSMg01no170_f07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:15 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(110,831,931 - 110,832,239)(111,000,179 - 111,000,462)
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCTTCTCGAGATGCCCGACTCAAGGCTCTAGGTACTTGTGGTTCC
CATGTCTGTGTTATTCTTCTGTTCTATACACCAGCATTCTTTTCTTTCTT
CGCTCATCGTTTTGGGGGTCACAGTATACCACTGCATGTGCACATTCTTC
TTGCCAATCTGTATGTGGTAGTACCACCCTCTGTCAACCCCATTATTTAT
GGAGTGAGGACTAAACAAATTCAGGAGAGGATTATTCAAATGTTTTCTTT
GGGCAAGTCATTTTGTTGATCTAAACCAAACAGATTGATTCTGTTCTTTA
TATTTTCTCTTTTTATATCACCCACTCACCGAGTATTTGAATTTACAATA
TAAATGTTAAATCAAGTCACCATTTCTGAGGGCGATTACAGCAATTTTGA
GCATGAAAAAAATGAGTAAATTTTACTCAGAATGTATTTTGTTTATAACA
AGAACACATTGCTTTATTGCTACTTTCATCTTTGTTTCAGCATATGTAAT
TCATACTATTTCAAAATTGTTCAATTTTATGTTTACACATAAAACAGGGG
GAAATTGTTATAACCCTTGTTCATATATGAAACAAATTGATACAGAATCC
TATATAATTTTGCCATTTTTCCATTTTTTTTCTAAAACTGGGGAATGAAG
ACTACTGAATGTCCAAAACATTTTTTTCAGGTTATCAC

TCAATACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACAGCTGAGATGCAGGCTGCCTGG
CAGAAGCTGGTGGCTGGGGTGGCCACTGCGCTGTCCCACAAGTACCACTG
AGCCCTCTCTCTAGCTGTCCAGCAATCCTGTGTGTCCGCTATGCCTCCTT
TCTGCACATGAATACTGGACTGTTCCTTGAAAGCACATCATGTTTAATAA
AGATCATCCTTCCTGGTAATCAAAAATTCAGTTTTGTCTTGTCTGCTTTC
TACTTTTATGCTAAAGACACATATTTGATGTGTTTGTGGAAAGGGGGAAG
CACAGGAAGATTCTTTGCATTCCTCTCCCACCTGCAGGGACTCAAGAGAG
AAACGTAGATGCCATGGAAGGCTTCTACAGGCCCAGAGAGAGTCTAAAGC
TGAAAAGAATTCTCAGAGAGAAGAAAGAAATTTAGTGGAGAAGGCATTGT
GTATGGAACATATGAACATTTACTGTAGAGGGTGAAGAAAAGGGTGACAA
GTGATACCTTGCAGCAGGTTGTGACATCCCATTACCATTAAGAAAAAGCT
CTTACGAGATCCAAGAGCTAAGATAGAATTAACTTTCTTTTACAAAGCAT
TTATTGGGTAACCAATTGGTGTGCTCTGCCCCGGGGAAGACTCTTGATCC
AGCTCTCAGCAACCCTTAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_f07.b1 MSMg01no170_f07.b1 CHROMAT_FILE:
MSMg01no170_f07.b1 PHD_FILE: MSMg01no170_f07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:15 2005
         (315 letters)



>mm_chr7_110831727_110832441
          Length = 715

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccttctcgagatgcccgactcaaggctctaggtacttgtggttcccatgtctgtg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccttctcgagatgcccgactcaaggctctaggtacttgtggttcccatgtctgtg 264

                                                                       
Query: 65  ttattcttctgttctatacaccagcattcttttctttcttcgctcatcgttttgggggtc 124
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 265 ttattcttctgttctatacaccagcattcttttctttctttgctcatcgttttgggggtc 324

                                                                       
Query: 125 acagtataccactgcatgtgcacattcttcttgccaatctgtatgtggtagtaccaccct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acagtataccactgcatgtgcacattcttcttgccaatctgtatgtggtagtaccaccct 384

                                                                       
Query: 185 ctgtcaaccccattatttatggagtgaggactaaacaaattcaggagaggattattcaaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctgtcaaccccattatttatggagtgaggactaaacaaattcaggagaggattattcaaa 444

                                                                       
Query: 245 tgttttctttgggcaagtcattttgttgatctaaaccaaacagattgattctgttcttta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tgttttctttgggcaagtcattttgttgatctaaaccaaacagattgattctgttcttta 504

                    
Query: 305 tattttctc 313
           |||||||||
Sbjct: 505 tattttctc 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no170_f07.g1 MSMg01no170_f07.g1 CHROMAT_FILE:
MSMg01no170_f07.g1 PHD_FILE: MSMg01no170_f07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:15 2005
         (286 letters)



>mm_chr7_110999979_111000664
          Length = 686

 Score =  542 bits (280), Expect = e-158
 Identities = 283/284 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   acagctgagatgcaggctgcctggcagaagctggtggctggggtggccactgcgctgtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 acagctgagatgcaggctgcctggcagaagctggtggctggggtggccactgcgctgtcc 425

                                                                       
Query: 61  cacaagtaccactgagccctctctctagctgtccagcaatcctgtgtgtccgctatgcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cacaagtaccactgagccctctctctagctgtccagcaatcctgtgtgtccgctatgcct 365

                                                                       
Query: 121 cctttctgcacatgaatactggactgttccttgaaagcacatcatgtttaataaagatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cctttctgcacatgaatactggactgttccttgaaagcacatcatgtttaataaagatca 305

                                                                       
Query: 181 tccttcctggtaatcaaaaattcagttttgtcttgtctgctttctacttttatgctaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 tccttcctggtaatcaaaaattcagttttgtcttgtctgctttctacttttatgctaaag 245

                                                       
Query: 241 acacatatttgatgtgtttgtggaaagggggaagcacaggaaga 284
           ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 244 acacatatttgatgtgtttttggaaagggggaagcacaggaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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